Acidipropionibacterium acidipropionici CGMCC 1.2230: ASQ49_16230
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Entry
ASQ49_16230 CDS
T04523
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaci
Acidipropionibacterium acidipropionici CGMCC 1.2230
Pathway
aaci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASQ49_16230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaci03400
]
ASQ49_16230
Enzymes [BR:
aaci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASQ49_16230
DNA repair and recombination proteins [BR:
aaci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASQ49_16230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
RecG_dom3_C
DUF3701
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ALN16560
UniProt:
A0A806VDX8
LinkDB
All DBs
Position
complement(3572033..3575635)
Genome browser
AA seq
1200 aa
AA seq
DB search
MSLGGLVSLLSREPVLTRAIRESLTGHVPTLDLGAAQPSRPAVTAAIARGLEGSGRGLPI
LLITSTFREAEEVTAHLESWLGDDEVCYYPSWETLPHERLSPRSDTVGRRLSVLRRIMGT
DGLTPPSVVVAPIRAALQPQVADLGAISPVRIAVGQEYDLTELATELVAAAYVRVDMVTR
RGEFAVRGGILDVFPPVLDHPVRIDFFGDEVEEIRTFTVADQRSTDDTHDDVVAAPCREL
ILTPEARARARALLPDHPELADMLEKIGQGQAVEGMEALIPALVDRIELLSDVLPANSLV
ILSDPELIRSRAAELVATSEEFLHAGWAAAAGGGQAPIDLAASGYRTLAEVRTRCLDRGM
SWWSMSSFSLDAPVGPSQATDEDLGTAPDTLNLHLDAVEPWHGDLESAVASMRTRLEEGW
TVILTVEGEGLGRRMVEVLSDHGVSARLEDDVDADTTDPVVHIVRAHQRQGFSSDRLKLV
VHGSADLTGEAPGADRAAKKMPARRRNQIQPLELKAGDLVVHEQHGVGRYVEMIQRTVAG
ATREYLVIEYAPARRGQPGDRLFVPMDSLDEVTRYVGGDAPALDKMGGADWKKRKARARK
AVKQIAAGLIKLYAARQATKGHAFGPDTTWQHELEDAFAYVETPDQLTTIADVKRDMEQV
VPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHTQTFSERYAGFPVN
VASLSRFQTDAEARKVKEGIQRGTIDVVVGTHRLLSDQIHFKDLGLVIIDEEQRFGVEHK
EALKKLRVNVDVLSMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTFAGPYDQGQVV
AAIRRELAREGQVFFIHNRVQDIEKTAARIREMVPEASVVTAHGQMHEKQLEQIMVDFWE
RRADVLVCTTIVESGLDISTANTLIVDRADRMGLSQLHQLRGRVGRGRERGYAYFLYPAD
KPLTETAHDRLATMAQHTDLGAGMSIAMKDLEIRGAGNMLGGEQSGHIADVGFDLYIRLV
GDAVASFRGEDAEEEPEMRIELPVDANLPTEYVESERLRLEMYRRLAEVRSDEDVDAIRE
ELLDRYGPLPETVEALLGVARFRLLCRSRGIREVVPAGNSIRFSPVHLPESRVMRLKRLY
PGSVVKDNAGLVLVPKPRTARIGGRPLGGAELLEWARGVVADVLTVAPPAHKAEPTPARA
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcttggcggtctggtgtcccttctgtcccgtgagcccgttctcacccgagcgatc
cgggaaagcctcaccggccacgtccccaccctcgacctgggcgccgcccagccgtcccgg
cccgccgtgacggcggcgatcgcccgcggcctggaggggtcggggcgcggcctgccgatc
ctgctcatcacctcgaccttccgcgaggccgaggaggtcaccgcccacctggagtcctgg
ctcggcgacgacgaggtctgctactacccgtcctgggagacccttccccatgagcgcctc
agcccccgctccgacaccgtcgggcgccgactgtcggtgctgcggcggatcatgggcacc
gacgggctgacgcccccctccgtcgtcgtcgccccgatccgcgccgccctccagccccag
gtggccgatctgggcgccatctccccggtgcgcatcgccgtcggccaggagtacgacctc
accgaactggccaccgaactcgtcgccgccgcatacgtccgagtcgacatggtgacccga
cgcggagagttcgcggtgcgcggcggcatcctcgacgtcttccccccggtcctggaccac
cccgtccgcatcgacttcttcggcgacgaggtggaggagatccgcacctttaccgtcgcc
gaccagcgctccaccgacgacacccacgacgacgtcgtcgccgccccctgccgcgaactc
atcctcacccccgaggcccgcgcccgcgcccgcgccctgctgcccgaccaccccgaactg
gccgacatgctcgagaagatcggccagggacaggccgtggagggcatggaggccctcatc
cccgccctggtcgacaggatcgagctgctgtccgacgttctgcccgccaactccctggtg
atcctgtcggaccccgaactcatccggtcgcgggccgccgagctcgtggccacctccgag
gagttcctccacgccggctgggcggccgccgccggtggaggacaggcccccatcgacctg
gcggcgtcgggataccgcaccctggccgaggtgcgcacccgctgcctggaccgcggcatg
tcctggtggtccatgtcgtccttctccctcgacgccccggtcggcccctcccaggccacc
gacgaggatctcggcaccgcccccgacaccctcaacctccatctcgacgccgtcgaaccc
tggcacggcgacctcgaatccgccgtcgcctccatgaggacccgcctggaggagggctgg
accgtcatcctcaccgtcgagggggagggcctgggacgccgcatggtcgaggtgctgtcc
gaccacggcgtctccgcacgtcttgaggacgacgtcgacgccgacaccaccgacccggtc
gtccacatcgtgcgggcccaccagcgtcagggattctccagcgaccgcctcaaactcgtg
gtgcacggctcggccgacctcaccggagaggcccccggcgccgatcgcgccgccaagaag
atgcccgcccggcgccgcaaccagatccagcccctggagctcaaggccggcgacctcgtc
gtccacgagcagcacggcgtcggccgatacgtcgagatgatccagcgcaccgtcgccgga
gccacccgcgaatacctggtcatcgagtacgcgcccgcccgcaggggccagcccggggac
cggctcttcgtgccgatggactccctggacgaggtgacccgctatgtcggcggcgacgct
ccggccctggacaagatgggcggcgccgactggaagaagcgcaaggcccgcgcccgcaag
gccgtcaagcagatcgccgccggcctcatcaagctctacgccgcccgccaggccaccaag
ggccacgccttcggccccgacaccacctggcagcacgaactcgaggacgccttcgcctac
gtcgagacccccgaccagctcaccaccatcgccgacgtcaagcgcgacatggagcaggtg
gtcccgatggaccgcctggtctgcggcgatgtgggctacggcaagaccgagatcgccgtg
cgggccgccttcaaggccgtccaggacggcaagcaggtcgccgtcctggtgcccaccaca
ctgctggtgcagcagcacacccagaccttctccgagcgctacgccggcttccccgtcaac
gtggcctcgctgtcgcgcttccagaccgacgccgaggcccggaaggtcaaggagggcatc
cagcgcggcaccatcgacgtcgtcgtcggcacccaccggctgctgtccgaccagatccac
ttcaaggacctcggcctggtgatcatcgacgaggagcagcgcttcggcgtggagcacaag
gaggccctcaagaagctgagggtcaacgtcgacgtcctgtcgatgagcgccacgcccatc
ccgcggaccctcgagatggccgtcaccggcatccgcgagatgagcaccatcgccaccccg
cccgaggagcgccacccggtgctcaccttcgccggcccctacgaccagggccaggtggtt
gcggcgatccgccgcgagctggcccgtgagggacaggtcttcttcatccacaaccgcgtc
caggacatcgagaagaccgccgcccggatccgcgagatggtgcccgaggccagtgtcgtc
accgcccacggccagatgcacgagaagcagctcgaacagatcatggtggacttctgggag
cgccgcgccgacgtcctggtgtgcaccaccatcgtcgagtccgggctggacatctccacc
gccaacaccctcatcgtcgaccgcgccgaccggatgggcctgtcccagctgcaccagctg
cgcggccgggtgggccgcggccgcgagcgcggctacgcctacttcctgtacccggccgac
aagccgctcaccgagaccgcccacgaccggctggccaccatggcccagcacaccgacctg
ggcgccggcatgtcgatcgccatgaaggacctggagatccgcggcgccgggaacatgctc
ggcggggagcagtccggccatatcgccgacgtcggcttcgacctctacatccgtctggtg
ggcgacgccgtcgccagtttccgcggcgaggacgccgaggaggagcccgagatgcgcatc
gagctgcccgtcgacgccaacctgcccaccgaatacgtcgagtccgagaggctgcgcctg
gagatgtaccgcaggctcgccgaggtgcgctccgacgaggacgtcgacgccatccgcgag
gagctgctcgaccgctacgggccgctgcccgagaccgtcgaggccctgctgggggtggcc
cggttccggctgctgtgccggtcgcgggggatccgcgaggtggtgcccgccggaaactcc
atccgtttctccccggtccacctgcccgagtcgcgggtgatgcgactcaagaggctgtac
cccggatcggtggtcaaggacaacgccgggctggtgctggtgcccaagcccaggaccgcc
cggatcggcggccgtccgctcggcggggccgagctgctcgaatgggcacgcggggtcgtc
gccgacgtcctcaccgtcgccccgcccgcccacaaggcagaacccacgccggcccgggcg
tag
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