Alicyclobacillus acidoterrestris: K1I37_01360
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Entry
K1I37_01360 CDS
T08106
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaco
Alicyclobacillus acidoterrestris
Pathway
aaco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K1I37_01360 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaco03400
]
K1I37_01360 (mfd)
Enzymes [BR:
aaco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1I37_01360 (mfd)
DNA repair and recombination proteins [BR:
aaco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K1I37_01360 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
SBP_bac_3
MFD_D3
AAA_22
RecG_dom3_C
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
UNO49237
UniProt:
T0CAP2
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All DBs
Position
298604..302161
Genome browser
AA seq
1185 aa
AA seq
DB search
MKGLVHLAAADEALQALALQIGPDRHDALITGVTGAGRQLFMAALYQLRNQKLAHESMLV
VTHTSSQAQTIWEDLKEYLPDVQVLLFPERENALVDVVASSTDVVSERIDILEHLTKGTP
TIVVTTLPAAAQPLTSKAQFLQQSLKLKVGDAVVMDDVIERIVRSGYERVELVETRGQFS
LRGGILDIFPMSAQHPYRIEWFDTDVDSIRTFDPASQRSLEKLDEISFGPASDLLVPPAA
AKLAASKLEKHLEARLRTVTDLEVRDRLQTVVGADIRKLESGQAFSGLARYSALFGNELN
TLFDYMPGDYFICLDEPSRLGERAKSLEKEFSEWMSDALMRGDMLSGTVEPIDYEALVAD
VPRGKVQFSTFTRAGSGQRFSQVLNVTAKSMQNFHGQMNVLKSEVARWQKSGLHIVFAAA
TKERADHLERVLEDYRIDATRVEEFTEAAAPQILTANLSSGFELPLHRLVVVVETEVFTA
KRKHRRSRVELTDAERIKSYQELNVGDYVVHVNHGIGKYLGIKTLEVDGRHKDYLYLSYA
GNDSLYVPVEQIDQIQRYIGSGEKEPKLYHLGGNEWQKVKSRVSKTVKDIAEDLVKLYAA
REATPGHAFSPDTPWQVDFENMFPYEETPDQLRAIADIKRDMERSRPMDRLLCGDVGYGK
TEVAVRAAFKAVMDGKQVAVLVPTTILAQQHYETFKERFAGFPVTIDMLSRFRTRKESQA
CIKGLKDGSVDIVIGTHRLLQKSIQFKDLGLLIVDEEQRFGVTHKERLKQLRANVDCLTL
TATPIPRTLHMSMMGVRDLSVIETPPENRFPVQTYVVEYNEGLIREALERELSRGGQVYF
VYNQVQSIHGMAERIGRLVPDARIAVAHGQMAEDELERVMLDFLEGETDVLVTTTIIETG
LDISNVNTLIVYDADRFGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLNEIAEKRLSAIK
EFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFINSVGFDMYSEMLAQAVRELRGEQVKQA
PEPTIDLPVEAYLPDSYIRDAAQKIQMYKRFKHVQTLSEANDLEEELEDRFGDLPAEVRN
LLDVTRLKSLAVQAGADQISAHGAETAIRFPGDTGTPIDYGKLLSMTMKHQGQPTRRPNG
LLFVSFRTKGMSDQELLKKLRDFLGDYVESLRGAGGTVETVAEVK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgaagggtctcgttcacctcgcagccgcggatgaagcgttgcaagccttagcgctacag
attggaccggataggcatgatgcgctgatcactggcgtcacaggtgccggtcgacaactg
tttatggcagcgctctatcagttgcgtaaccagaagcttgcgcatgaatcgatgctggtc
gtcacacatacatccagtcaagcccaaacgatttgggaggatttaaaagaatatttgccc
gatgtgcaggtgctgttattcccagagcgggaaaacgccctggtcgacgtggtcgcgtcg
tctacagacgtcgtgtcggagcgaatcgatatcctggagcatctcacgaaggggacgccg
accatcgtcgtgacaacgcttccggcggccgcccagccattgacgtcgaaagcgcagttt
ttgcagcaatcgctcaaactcaaagtcggcgacgcagtcgtgatggacgacgtgatcgaa
cgaatcgtcaggagtggctacgaacgcgtagagctcgtggagacgcgcggccagttcagc
ttgcgcgggggcatactggacatctttccgatgtctgcgcagcacccttatcgaattgag
tggttcgataccgacgtggacagcattcgcacgttcgatccggcctctcaacgctccttg
gaaaaattggatgagatttcgttcggaccggcctctgacttactggtgccgcccgccgct
gcgaagctggcagccagtaaactggaaaagcacctagaggcgcgcctgcgcacggtcacg
gacttagaggtgcgtgatcggttgcagacggtggtcggcgcagacatccgcaaattggag
agcggtcaggcgttttcagggctggctcgatatagcgcgctgtttggaaacgaattaaac
acgctgtttgactacatgccaggcgactatttcatctgcctggatgagccatcgaggctc
ggcgagcgggcgaagtccctggaaaaagagttttccgagtggatgtcagatgcgttgatg
cgcggtgacatgttgtccgggacggttgaacccatcgactacgaggcgttagttgctgac
gtgcctcgtgggaaagttcagttttcgacgtttacccgggcagggtccggccagcgcttc
agccaggtcctcaacgtcacggcgaagagtatgcagaacttccatgggcagatgaacgtc
ctcaaatcagaggtcgctcgctggcagaagagcggactgcacattgtgttcgccgcagcc
acgaaagagcgcgcagatcatctggaacgcgtgctcgaggactatcgaatcgacgccacg
cgcgtcgaggaatttaccgaggcagcggctccgcagattctgaccgcgaatttgtcgagt
ggtttcgaactgccgctgcaccgattggtcgtcgtcgtcgagaccgaggtatttacggcg
aagcgcaaacatcggcgctcccgtgtcgagttgacggatgcggaacgcatcaagagctat
caagagttgaatgtgggcgactacgtggtccatgtcaatcacgggattggcaagtactta
ggtatcaagaccctggaggtcgacggtcgccacaaggattacctgtatctgagttacgcc
ggcaacgacagcttgtatgtgcccgtcgagcagatcgaccaaattcagcgctacatcgga
tccggcgaaaaagagccgaaactctatcatctcggcggaaacgagtggcagaaagtcaag
tctcgcgtcagcaagaccgtcaaggatatcgccgaagacctcgtcaaattgtacgcggcg
cgcgaggcgacgcccggtcacgccttttcgcccgatacgccgtggcaagtcgacttcgag
aacatgtttccctatgaggagacgccggatcaactgcgggccattgccgatatcaagcgg
gatatggagcgatctcgccccatggaccgcctactttgcggcgacgtcggctatgggaaa
accgaggtggctgtgcgcgccgcgttcaaagcggtcatggacggcaaacaggtggcagtg
ctggtcccgactacgattctcgcgcaacagcactatgagacctttaaggaacgattcgct
ggattcccagtgaccatcgacatgttgagtcgttttcgcacgcgcaaggagtcgcaggcg
tgcattaaagggctcaaggacggcagtgtcgatattgtcatcgggacccatcgactgctg
caaaagtcgattcagttcaaggacttggggctcttaattgtggatgaggagcaacgcttc
ggcgtgacccacaaagagcgcctcaagcagctgcgcgcgaacgtcgactgcctgacgctg
acggcgacgccgattccgcggacgctgcacatgtcgatgatgggtgttcgcgatttgtcg
gtcattgagacgccgccagagaaccgcttcccggttcaaacctatgtggtggaatacaac
gagggcctgatccgcgaagcgctggaacgcgaactgagccgtggcgggcaggtgtacttc
gtgtacaaccaggtgcagtcgattcacggcatggccgagcgcattggtcggttggtccct
gacgcgcgaatcgcggtggcgcatgggcagatggcggaagacgagctcgaacgcgtgatg
ctcgatttcctggagggtgagacggacgttctggtgacgacgactatcatcgagacgggt
ctcgatatttcaaacgtcaatacgctgattgtctatgacgcggaccgctttgggttgtcc
cagttgtaccaattgcgtgggcgtgtcggccgctcgaatcgcattgcgtacgcgtacttc
acgtatcaacgcgacaaggtgctcaacgaaatcgccgaaaaacggctgtccgccatcaag
gagtttacggagctcggcagcggttttaaaatcgccatgcgcgatttgtccatccgcggg
gccggcaacttactcggcgccgaacagcacggatttattaattcagtcggcttcgacatg
tacagtgaaatgctggcgcaggccgttcgcgaattgcgtggggaacaggtcaaacaggcg
ccagaaccgacgattgatctgcccgtcgaagcgtatttgccagatagctacattcgcgat
gcggcgcaaaagatccagatgtacaaacgctttaaacacgtccagaccctgagtgaggcc
aacgacttggaggaggaactggaagatcgctttggcgatttgccggcggaggttcgcaat
ttgctggatgtcacccgcttgaagagccttgcggtccaagctggtgcggatcagatttcg
gcgcatggtgccgaaacagccatacgcttccctggtgacacaggaacgccgattgactat
ggcaagctgctctcgatgacgatgaagcatcagggacagccgacgcgccgcccaaatggg
ctcttgttcgtctcattccgcaccaagggcatgtctgaccaggagctgttgaagaaactg
cgggacttccttggtgactacgtagagagcttgcgcggagccgggggcaccgtggaaacg
gtggcagaggtcaagtga
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