Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_0249
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Entry
TC41_0249 CDS
T01821
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Pathway
aad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TC41_0249 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_0249 (mfd)
Enzymes [BR:
aad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TC41_0249 (mfd)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TC41_0249 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SBP_bac_3
AAA_22
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AEJ42223
UniProt:
F8IJN4
LinkDB
All DBs
Position
231266..234709
Genome browser
AA seq
1147 aa
AA seq
DB search
MCWEGEKVKGLVELMAADGALSSLADGMGPRRNDMLITGVTGAGRQLVMAALYHLRNRRL
PESMIVVTHTASHAQTIWEDLKEYLPDARVYLYPERDNALVDYLASSSDVLADRLHVLEA
LAQEGPVVVVTTLLAAWQPVTKKHHFLHSLVNLAVGETKPIDDVVAQLVRGGYERVSLVE
SRGQFSVRGGILDVFPLGHDLPYRIEWFDTDIDSIRTFDPATQRSQDKRDRVSFGPAFDL
MLPQPVADKVADELEARLEARLKTVTDAALRDRLEQSISADIRKLREGQPFAGVARYQLL
FPDHADTLFDHVSQPAFVCFDETARILERAEVLEKEFREWLSGAIMRGEVLSGTVDAIHY
EAKFQELNRPKVHFATFAHTRGSQRYQQVLNISARSMQNFHGQMNVLKQELARWEKAHTQ
VVFAAATKERADHLARVLDDYRIQADQVEVFTPGSKVPQIVVANLSSGFELPMHRIAVIV
ETEVFTAKRKHRQTRAQVSDAERIKSYQELNVGDYVVHVNHGIGRYMGIKTLEVDGRRND
YLYLSYAGGDSLYVPVDQIDQIQRYIGSGEKEPKLHSLGSSEWQKTKNRVKKSVRDIAGD
LLKLYAKREATPGHAFSPDTPWQADFENMFPYEETPDQLRAIAEIKRDMEKPRPMDRLLC
GDVGYGKTEVAMRAAFKAVMDGKQVAVLVPTTVLAQQHYETFKERFAGFPVKIEMLSRFR
TRKETQEVLKGLKEGTIDIVIGTHRLLQNSVQFKDLGLLIVDEEQRFGVTHKEKLKQLRA
NVDCLTLTATPIPRTLHMSMLGVRDLSIIETPPENRFPVQTYVVEYNEGLVKEAIERELA
RGGQVYFVYNDVQTIHRMAERVQSLVPDARVSVAHGQMAEAELERVMLDFLEGEYDVLVT
TTIIETGLDIPNVNTLIVYDADKFGLSQLYQLRGRVGRSNRIAYAYFTYQPAKVLSEVAE
KRLAAIKEFTELGSGFKIAMRDLSIRGAGNLLGAEQHGFINSVGFDMYTELLQQAIRELR
GEQLEKPVEPTIDVPVEAYIPDTYISDPSQKVAMYKRFRAIQAVSEADDLEDELIDRYGD
PPQEVRNLLDVTRLKSLAMQAHADHIATQGAETTVRFPNESRRPSIIRSSCPWRSSTRRR
SPRGRTA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
gtgtgctgggagggggaaaaggtgaagggtctcgtcgaactcatggccgcagacggggcg
ctttcgtcattggcggacgggatggggccgcgcagaaacgacatgctcatcacgggcgtg
accggagccggacggcagctcgtgatggcggccttgtaccatctccgcaatcgccgtctc
ccagagtcgatgattgtggtgacgcatacggccagtcacgcgcagaccatctgggaggac
ttgaaggagtacctgccggacgcgcgcgtctatctgtatcccgagcgagacaacgcgctc
gtggattacctggcgtcgtcctcggatgttctggcggatcggctgcacgtccttgaggcc
ctcgcgcaggagggccctgtcgtcgtggtcaccacgcttctcgcggcctggcagccggtg
acgaaaaagcatcactttctacactcgctggtgaacctcgcggtaggggagaccaagccc
atcgacgacgtggtggctcagctcgtgcgcggcggctacgagcgcgtcagcctcgtggag
agccgcggccagttcagcgtgcgcggcggcatcctcgacgtcttcccgctgggccacgac
ctcccatatcgcatcgagtggtttgacacggacattgactccattcgcacgttcgatccc
gcgacgcagcgatcccaggacaagcgggatcgcgtgtcgtttggcccggcgttcgacctg
atgctcccgcagcccgtcgcggacaaggtggcggatgagctcgaggcacggctggaagcc
aggctgaagaccgtgaccgatgcggcgctccgggatcggctggagcagtccatctcggcg
gacatccgcaagttgcgagaggggcagccgtttgcgggcgtggctcgctaccagcttctg
ttcccggatcacgcggacacgctgttcgatcacgtctctcagcctgcatttgtctgcttc
gacgagacggctcggatcctggagcgcgcggaagtgcttgagaaagagtttcgcgagtgg
ctctcaggcgccatcatgcggggcgaggtgctctcggggacggtcgacgccattcactac
gaggcgaagtttcaggaattgaatcggccgaaggtgcattttgcgacgttcgcccatacc
cgcggcagtcagcggtatcagcaggtgctcaacatctcggcgcgcagcatgcagaatttc
cacggtcagatgaacgtgttgaagcaggagctcgcccgctgggagaaggcgcacacgcag
gtggtgtttgcggctgcgaccaaggagcgggcggatcacctggcgcgcgtcctggacgac
tatcgcatccaggcggaccaggtagaggtctttacgccgggatcgaaggtgccgcaaatt
gtcgtcgccaacctgtcgagcgggttcgagttgccgatgcaccgcatcgccgtgatcgtc
gagaccgaggtgttcacggcaaagcgcaagcatcgccagacgcgcgcgcaggtctcggat
gcggagcggatcaagagctaccaggagttgaacgtcggcgactacgtggtgcacgtgaat
cacggcattggccgatacatgggcatcaagacgctcgaggtggatggccgccgcaacgac
tacctgtacctgagctacgcgggcggggacagcctgtacgtgccggtggaccagattgac
cagattcaaaggtacatcggctcgggcgagaaggagccgaagctgcacagcctcggatcg
agcgaatggcagaagacgaagaaccgcgtcaagaagtcggtgcgcgacatcgcgggggat
ctcctgaagctttacgcgaagcgcgaagcgacgcccgggcacgcgttctcgcccgacacg
ccctggcaggcggacttcgagaacatgttcccatacgaggagacgccggatcagcttcgc
gccatcgcggagatcaagcgggacatggagaagccgcgcccgatggatcggctcttgtgc
ggcgacgtgggctacggcaagacggaggtcgccatgcgcgcggcgttcaaggcggtgatg
gacgggaaacaagtcgcggtcctggtgccgacgacggtcctcgcgcagcagcactatgag
acgttcaaggagcggttcgccggattcccggtgaaaattgagatgctgagccgcttccgg
acgcgcaaggagacgcaggaggtgttgaagggcctcaaggaagggaccatcgacatcgtc
atcggcacccaccggcttttgcagaactcggtgcagttcaaggatcttgggcttctcatt
gtggacgaggaacagcgcttcggcgtgacgcacaaggaaaagctgaagcagttgcgcgcg
aacgtggactgtttgacgctcaccgcgacgcccatcccgcgcacgctccacatgtccatg
ctcggcgtgcgcgatctgtccatcatcgagacgccgcctgagaaccggttcccggtgcag
acgtacgtcgtggagtacaacgagggccttgtcaaggaagccatcgagcgcgaactcgcc
cgcggcggacaggtgtacttcgtctacaacgacgtccagaccatccaccgcatggcggaa
cgcgtgcagtcgctcgtgcccgatgcgcgcgtgagcgtggcgcacggtcagatggccgag
gcagagctcgagcgcgtgatgctcgactttctcgaaggcgagtacgacgtgctcgtcacc
accaccatcatcgagacgggactcgatattccgaatgtgaacaccttgattgtctacgac
gccgacaagttcggtctgtcccagctttaccagctgcggggccgcgtcggccgatccaac
cggattgcgtacgcatattttacctatcaaccggccaaggtgctgtcggaggtcgcggaa
aagcgcctggcggccatcaaggagttcaccgaactgggcagcggcttcaagatcgccatg
cgcgacctgtccatccgcggcgcgggcaacctgctcggtgccgagcaacacggattcatc
aactcagtgggcttcgacatgtacacggaacttttgcagcaggccatccgcgagctgcgc
ggcgagcagctggagaagcccgtcgaaccgaccattgacgtgcccgtcgaagcgtacatt
ccagacacctatatctcggatccgtcgcagaaagtggccatgtacaagcggttccgggca
atacaggcggtgtccgaggcggacgatctcgaggacgagctcatcgatcgctacggcgat
ccgccgcaggaggtgcgcaatctgctcgacgtgacgaggctcaagagcctcgcgatgcag
gcgcacgcggatcacatcgcgacgcagggggccgagacgaccgtgcggttcccgaacgaa
agcaggcggccgtcgattatccgaagctcctgtccatggcggtcaagcacaaggcgcagg
tcacctcgcggccgaacggcatga
DBGET
integrated database retrieval system
