Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_1544
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Entry
TC41_1544 CDS
T01821
Symbol
lig
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Pathway
aad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TC41_1544 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_1544 (lig)
Enzymes [BR:
aad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TC41_1544 (lig)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TC41_1544 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AEJ43476
UniProt:
F8IJW4
LinkDB
All DBs
Position
complement(1518187..1519113)
Genome browser
AA seq
308 aa
AA seq
DB search
MKRMKRRETPPTLTHGDKIYFPGAGLNKRDYMTYLAQIGAHLVRHLRYRPVTLVRCPDGV
TGRRFYQRHLPPHAPPSLPRKEVQGERPLIAIPDVETLLYYGNLGAIEFHAGLHQSDGPQ
AGCPTALTFDLDPSDPNDFERVRELALRLREVLRELELDGLAKTTGASGLQVFVPLEQPL
PYAVTRPVVNFIAAYCASRWPDLATTERRVHQRGSRVYVDAPQHGPSRTLIAAYSVRAVE
KALVSVPITWDELAGGVSPDEFDLNVVPDRLARMGDLLGIAPRCPSSRVQAIHDALPPPW
RQTRVRSV
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcgcatgaaacgccgcgaaaccccgccgacgctcacccatggggacaagatctac
tttccaggcgcggggctcaacaagcgcgactacatgacgtatcttgcccaaatcggcgcg
cacttggtccgccacctgcgctaccggcctgtcacgttggttcgttgccccgacggggtg
accggccgccgattctatcagcggcatctaccgccgcacgcacctccgagcctgccgcgt
aaagaggtccaaggcgaacgcccgttgattgccatcccggacgtcgagacgctcttgtac
tacggaaacttgggcgccatcgagtttcacgcgggcctgcaccagtccgacggccctcaa
gccggatgccccacggcgctcacgttcgatctcgacccttccgatccgaacgatttcgag
cgcgtgcgtgagctcgcgctgcgcctgcgcgaggtgcttcgcgagctcgagctcgacgga
cttgccaagacgacaggcgcctccggcctgcaagtcttcgtcccgctggagcagccgctc
ccatacgccgtcacgcgtccggtggtgaattttattgcggcgtactgcgcgtcgcgctgg
ccggatctggccaccaccgagaggcgcgtgcaccagcgaggaagccgcgtctacgtggac
gcacctcagcacgggccatcgcgcaccctgatcgcggcgtacagcgtgcgcgcggtcgag
aaagcgcttgtgtcggtgcccatcacctgggacgagctcgcaggcggggtgtcgcccgac
gagtttgatctcaacgtggtgcctgacagattggcccggatgggcgacttgttgggcatc
gccccgcgctgcccctcgtcgcgcgtgcaggccatccacgatgcgctccctccgccttgg
cgacaaacgcgcgtccgttcagtataa
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