Achromobacter aegrifaciens: RA224_25555
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Entry
RA224_25555 CDS
T09343
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaeg
Achromobacter aegrifaciens
Pathway
aaeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RA224_25555 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaeg03400
]
RA224_25555 (mfd)
Enzymes [BR:
aaeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RA224_25555 (mfd)
DNA repair and recombination proteins [BR:
aaeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RA224_25555 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
SNF2-rel_dom
UB2H
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WLW60565
LinkDB
All DBs
Position
5478116..5481598
Genome browser
AA seq
1160 aa
AA seq
DB search
MPASSLMPAPSAPANFAPPVPATAPTLSALKVGARYAQPRPPGSGDAWLLADLARQASAP
LVILTAEPVEAQRLAEEIQLFAPDLRVRQLPDWETLPYDAFSPHQDLISERLHTLHSLMT
KSVDVLTVPITTALYRLAPPSFLAAYTFSFKQKDKLNEAALRAQLTLANYNHVTQVTAPG
EFCLRGGLIDLFPMGSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMD
EDARNRFRARFREVFEGDPSRALPYKDIGNGIPFAGVEYYLPLFFEETATLFDYLTQGTV
TVTVGDIDDAIQRFNQDTSSRYGFLKSDRERPVLPPSELFLDNETLYARLKDFRRLSLTA
GQPHPDFRAAPDVSVARRSEDPIAKLRALVQAGQTRVLLCADSAGRRETLVQMLNEFGVT
PDAQPDTIEAFLASDAHFGIVAAPLSTGFGLPQANLAFLTENDLYPGLATTGRRGKRDQE
RASNVEAMVRDLSELRAGDPVVHAQHGIGRYHGLVNMDMGEGGMEFLHLEYANGSTLYVP
VSQLHVIARYSGADPEAAPLHQLGSGQWDKARRKAARQVRDTAAELLALYAQRAAREGYA
FNLPLNDYQAFAEGFGFEETADQAAAIEAVIADMTSGRPMDRLVCGDVGFGKTEVALRAA
FLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVKVVELSRFRSAKEVSAAIEGINDG
RVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRT
LGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETI
HNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANT
IVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSG
FYLAMHDLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRAGEEPDLDAPFNLAC
EVNLHAPALLPSDYCADVHARLGIYKRLAHAADEDDLIHIQEELIDRFGKLPEAAQTLLA
THRLRLAAQPLGIVKIDASETQALLQFGPKTSVDPGKIIELVQRQRHIKLAGQDKLRVEI
KAAQIPARADAVRAVLRALK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcttccagcctgatgccagccccctccgcccccgctaacttcgcgcctcccgtc
cccgccacggcccccaccctgtccgcgctgaaggtcggcgcgcgctatgcgcagccgcgc
ccgccagggtccggcgacgcctggctgctggcggatctggcgcggcaggcctcggcgccg
ctggtcatcctgaccgccgagccggtcgaggcccagcgcctggccgaggaaatccagctg
ttcgccccggacctgcgggtgcgccagttgcccgactgggaaacgctgccctacgacgcc
ttctcgccgcaccaggacctgatttcggaacgcctgcacacgctgcactcgctgatgacc
aagtcggtggacgtgctgaccgtgccgatcaccacggcgctgtaccggctggcgccgccc
tctttccttgcggcctacaccttttccttcaagcagaaggacaagctcaacgaagccgcg
ctgcgcgcccagctgaccctggccaactacaaccacgtcacccaggtgacggcgcccggc
gagttctgcctgcgcggcggcctgatcgacctgttccccatgggctcggtggtgccctac
cgcctggacctgttcgacgacgagatcgagaccatccgcagcttcgacgtggacacgcag
cgcagcctgtacccggtgcgcgaagtgcagctgctgcccggccgcgaattcccgatggac
gaagacgcgcgcaaccgcttccgggcgcgcttccgtgaagtcttcgaaggcgatccttcg
cgcgccttgccttacaaggacatcggcaacggcattccgttcgccggcgtcgagtactac
ctgccgctcttcttcgaggaaacggcgaccctgttcgactacctgacgcaaggcacggtc
accgtcaccgtaggcgacatcgacgacgccatccagcgcttcaaccaggacacctccagc
cgctacggcttcctcaagagcgaccgcgaacggccggtgctgccgccgtccgaactgttc
ctggacaacgagacgctctacgcgcggctgaaggacttccgtcgcctgtcgctgaccgcc
ggccagccgcacccggacttccgcgcggcgcctgatgtgagcgtggcgcggcgttctgaa
gatcccatcgccaagctgcgcgcgctggtgcaggccggccagacacgcgtgctgctgtgc
gccgactccgccggccggcgcgagaccctggtgcagatgctcaacgagttcggcgtcaca
ccggacgcacagcccgacaccatcgaagccttcctcgcctcggacgcccatttcggcatc
gtcgccgcgccgctgtccaccggcttcgggctgccccaggccaatctggccttcctcacc
gaaaacgacctgtacccgggcctggccaccaccggccgccgcggcaagcgcgaccaggaa
cgcgccagcaacgtcgaagccatggtgcgcgacctgtccgagctgcgtgcaggcgacccc
gtggtccatgcgcagcacggcatcggccgctaccacggcctggtcaacatggacatgggc
gaaggcgggatggaattcctgcatctggagtacgccaacggcagcacgctgtacgtgccg
gtgtcgcaactgcacgtgatcgcccgctacagcggcgccgatccggaagccgcgcccctg
caccagctgggctccggccaatgggacaaggcgcgccgcaaggccgcccgccaggtccgc
gacaccgccgccgagctgctggcgctgtacgcccagcgcgccgcgcgcgaaggctacgcc
ttcaacctgccgctcaacgactaccaggccttcgccgagggcttcggcttcgaggaaaca
gccgaccaggccgccgccatcgaggccgtcatcgccgacatgacctccggccgccccatg
gaccgcctggtctgcggcgacgtgggcttcggcaagaccgaggtcgcgctgcgcgccgcc
ttcctggccgtggccaacggcaagcaggtcgccctgctctgccccaccacgctgctggcc
gaacaacatgcgcagaccttctccgaccgcttcgccgactggcccgtgaaggtcgtggag
ctgtcgcgcttccgttcggccaaggaagtttccgccgccatcgaaggcatcaacgacggc
cgcgtggacatcgtcatcggcacccacaagatcctgtccaaggacgtgaaattcaagcgc
ctgggcctggtcatcatcgacgaggaacaccgcttcggcgtgcgccagaaggaagccttg
aaggcgctgcgcgccgaggtcgacgtgctgacgctgaccgccacgcccattccgcgcacg
ctgggcatgtcgctggaaggcatccgcgacttctccgtcatcgccaccgcgccgcaaaag
cgcctggccatcaagaccttcgtgcggcgcgaggacggcagcaccctgcgcgaagcgctc
ttgcgcgaactcaagcgcggcggccagtgctatttcctgcacaacgaagtcgagaccatc
cacaaccgccgagcccgcctggaagaactggtgcccgaggcccgcatcgccgtggcccat
ggccagatgcccgagcgcgagctggaacaggtgatgaagggcttctaccagcagcgctac
aacgtgctgttgtgcaccaccatcatcgaaaccggcatcgacgtgcccagcgccaacacc
attgtgatccaccgcgccgaccgcttcgggctggcccaactgcaccagctgcgcggccgg
gtcgggcgctcgcaccaccaggcctacgcctacctgctgacgcccggcgaggacgccatc
accaacaacgccaagaagcgcctggaagccatccaggccatggaagagctgggttcgggc
ttctacctggccatgcatgacctggagatccgcggcacgggcgaagtgctgggcgattcg
cagtccggcaacatccaggaagtgggcttctcgatgtacaacgagatgctcaacgaagcc
gtgcgcgcgctgcgcgccggcgaagaacccgacctggacgcgcccttcaacctggcctgc
gaagtcaacctgcacgccccggcgctgctgccgtccgactattgcgccgacgtccatgcg
cgcctgggcatctacaagcgcctggcgcacgccgcggacgaagacgacctgatccacatc
caggaagaactgatcgaccgcttcggcaagctgcccgaggccgcgcagacgctgctcgcc
acgcaccgcctgcgcctggccgcccagcccctgggcatcgtcaaaatcgacgccagcgaa
acccaggcgctgctgcaattcggccccaagacctcggtcgatcccggcaagatcatcgaa
ctcgtgcagcgccagcgtcacatcaaactggcgggacaggataaattgcgggttgagatc
aaggccgcgcagattccggcccgcgccgacgccgtgcgcgccgtgctgcgcgccttgaag
taa
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