Acidihalobacter aeolianus: BJI67_08250
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Entry
BJI67_08250 CDS
T09769
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaeo
Acidihalobacter aeolianus
Pathway
aaeo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJI67_08250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaeo03400
]
BJI67_08250
Enzymes [BR:
aaeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJI67_08250
DNA repair and recombination proteins [BR:
aaeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BJI67_08250
BRITE hierarchy
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AOV18524
UniProt:
A0A1D8KC44
LinkDB
All DBs
Position
1797619..1801110
Genome browser
AA seq
1163 aa
AA seq
DB search
MPESLSAKPLPTSAVDPLRPSHPRGRNDSTALYNLKGAALAIAAAAAADAHAGPTLLITG
DTQAAWHLEQSLRFFLPQGVEVLHLEDWETLPYDVFSPHDDIVSQRLAVLNRLPTLQRGV
IVVPMQTLMQRLAPPVYIHGHALNFRTGERLDVDTFRRRLEAGGYRAVNQVMAHGEFAVR
GEILDLYPMGCPQPYRLDLFDDEIESIRAFDPESQRSGDQVESIELMPGHEFPLNDEGIK
TFRRRYRERFEGDPQNSAVYRGVSQGTPPGGIEYYLPLFFERTATLFDYLPQNALVLLAG
DVWTAAERQFALIEERHEQRRHDIERPLLKPAELFLDLHDLQSAVAGHPRLALSSTPGPE
TAMDSEQAETAALPPLRLEPRASEPAGALRRFLHETSCRVLFTAESAGRREALAELLHGH
GLQPKTVESWSEFLASDIPLALSVAPVEAGVMLPGRGIAIVDEQSLFGQRAQQHRRNRRQ
TRDADAVIRNLTDLNPGAPVVHEEHGVGRYQGLSRLNIGEIEAEFLVLEYAGGDRLYVPV
VSLHLISRYTGASPDEAPLHKLGGDQWQRLRKRAAEKASDAAAELLEINARRAARQGQSF
IVDGDEYAAFASAFPFEETPDQQTAIKAVLADLAAPHPMDRVVCGDVGFGKTEVAMRAAF
AVAQSGWQVAILVPTTLLAEQHLNNFRDRFAEWPFRIESLSRFRSKKEQDGVLKALVEGT
VDIVIGTHKLLSPEVRFKRLGLAIVDEEHRFGVRHKERLKQLRAEVDLLTLTATPIPRTL
NMSLSGLRDLSIIATPPPRRHTIKTFVHEWSDTLITEACARELSRGGQIYFLHNEVKTIE
RSVAQLRALMPHARIGMAHGQMRERELEQVMLDFYHRRYDMLVATTIIESGIDVPNANTI
IIDRADRLGLAQLHQLRGRVGRSHHRAYAYLITPPRKALTPDAVKRIEAIETLGDLGVGF
SLATHDLEIRGAGELLGEDQSGQIQEIGFTLYNELLERAVDALKAGKLPELERPLDHGAE
VDLAMPALLPDDYVSDVHSRLILYKRIASAATEEDLRELQVELIDRFGLLPDPTKHLFEM
TRLKLRLAPLGVRKLEAGPQGLRIVFSELTSVDPARLIALLQSDPQCYRLDGQYKLRVTR
PLDAVEDRLDAIEALIAKLTPAA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaatcgctttccgccaaaccacttcccaccagcgcggtcgatccgctgcgcccg
tcgcaccccagggggcgcaatgacagcacggcgctgtacaacctcaagggcgccgcactg
gcgatagccgctgccgcagctgcggacgcacacgcaggcccgacgctgctcatcacgggc
gacacccaggccgcctggcatctggaacaatccctacgctttttcctcccccagggcgtc
gaagtcctgcatctggaagattgggaaacgcttccctacgacgtcttctctccgcacgac
gacatcgtttcgcagcggctggccgtgcttaaccgtctacccacactgcaacgcggcgtc
atcgtcgtgccgatgcagacgctgatgcagcgcctggcacctcctgtttacatccacggt
cacgccctgaacttccgcaccggcgagcgcctcgacgtcgacacctttcgtagaaggctc
gaggcaggcggctaccgcgctgtcaatcaggtcatggcgcacggcgaatttgccgtacgc
ggcgagatcctcgatctctatccgatgggttgtccgcagccctatcgtctggacctgttc
gacgacgaaatcgaaagcatccgagccttcgatccggaatcccagcgctccggggatcag
gtcgagagcatcgaactcatgccgggacatgagttcccgctcaacgacgaaggcatcaag
acctttcgtcggcgctatcgagagcgtttcgagggcgatccgcaaaacagcgcggtctat
cgcggagtcagtcagggcaccccgcctggcggtatcgaatactacctgccgctgttcttc
gaacgcaccgcgaccctgttcgactatcttccgcaaaacgccctggtcctgctcgcaggc
gacgtatggaccgctgctgaacggcagttcgcgctaattgaagaacgccacgaacaacgc
cgtcacgatatcgagcgaccgctgctcaaaccggcagaactgtttctggacctgcacgac
ctgcaatctgcggttgccgggcatccgcgtctcgccttgtcctctacacccggcccagag
acagcgatggattccgagcaggctgaaaccgcggccctccctccgctgcgcctggaaccc
cgtgccagcgagccggccggcgcactgaggcgcttcctgcacgaaacctcctgccgcgtc
ttgttcacggccgaatcggccgggcgccgcgaagccctggccgaactcctgcacggccac
ggcctgcagcccaaaaccgtggaaagctggagcgagttccttgccagcgacataccgctc
gccttgagcgtggcacccgtcgaggccggcgtcatgctgccgggacgcggcattgccatc
gtcgatgagcagtcgctcttcggacagcgtgcccagcagcaccgccgcaaccggcgccag
acgcgcgacgccgacgcggtgatccgcaacctgaccgatctcaatccgggcgcgcccgta
gtccacgaggaacatggcgtcggccgttaccagggactcagccgcctgaatatcggcgag
atcgaggccgaattcctggtactcgaatacgccggcggggaccgcctgtacgtgccggtc
gtctcgctgcacctcatcagccgctacaccggcgccagccccgacgaagcgccgctgcac
aagctcggcggcgaccaatggcaacgtctgcgcaagcgcgcagcggaaaaggcctccgat
gcggccgccgagctgcttgagatcaatgcccgccgcgcggccaggcaaggccagtccttt
atcgttgacggcgacgaatacgccgccttcgcaagtgcctttcccttcgaggaaacgccg
gaccaacagaccgcgatcaaggcggtgctggcggacctcgcagccccgcacccgatggac
cgcgtcgtctgcggcgacgttggcttcggcaagacggaagtggccatgcgcgcagcgttt
gccgtggcccagagcgggtggcaggtcgccatcctggtacccaccactctgctcgccgaa
cagcacctgaacaacttccgcgaccgctttgccgaatggccgttccgcatcgaatcgctg
tcccgcttccgcagcaagaaggagcaggatggcgtgctcaaggcgctggtcgaaggtacc
gtcgacatcgtcattggcacccacaaactgctctcgcccgaggtgcgcttcaagcgcctg
ggactcgccatcgtcgacgaggaacaccgtttcggcgtacgccacaaggaacgcctgaag
caactgcgcgccgaggtggatctgctcaccctgaccgccacgccgataccgcgcacgctc
aacatgtcgctctccggcctgcgcgacctgtcgatcatcgccactccgccaccgcgcaga
cacaccatcaagaccttcgtgcacgaatggagcgacacgctgatcaccgaggcctgcgca
cgcgagctgagccgcggcggacagatctacttcctgcacaacgaggtcaagaccatcgaa
cgctcggtggcccagttgcgcgcgctgatgccccatgctcgcatcggcatggcccacggc
caaatgcgagagcgcgaactcgaacaggtgatgctcgacttctatcaccgccgctacgac
atgttggtcgccaccaccatcatcgagagcgggatcgacgtgcccaacgccaataccatc
atcatcgatcgcgcggatcgcctcggcctggcccagctgcatcagctccgcggacgcgtg
gggcggtcgcaccaccgcgcctatgcgtatctcatcaccccgccgcgcaaggcgctgacc
ccggatgcggtcaaacgcatcgaggccatcgaaaccctcggcgacctcggcgtcggtttc
agcctcgccacgcacgatctcgagatccgcggtgccggcgagcttctcggagaggatcag
agcggacagatccaggagatcggcttcacgctatacaacgaactgctcgaacgcgctgtg
gacgcgctcaaggccggcaagctgccggaactggaacgccccctggaccatggagccgag
gtcgatctggcgatgcccgcgctgctgcccgacgattatgtaagcgacgtacacagccga
ctgattctgtacaagcgcatcgccagcgcggcaacggaagaggatttgcgcgagcttcag
gtggaactgatcgaccgtttcggactgttgcccgacccgaccaaacacctcttcgaaatg
acgcggctcaagctgcgtctggcgccgctcggcgttcgcaagctggaggccggtccgcaa
gggctgcgtatcgtcttttccgaactgacctcagtcgatccggcacgcctcatcgccctg
ctccagtcggacccgcagtgctatcgtctggatggccagtacaaactgcgcgtgactcga
ccgctggacgcagtcgaagatcgcctggacgcgatcgaggccctgatcgccaaactcacg
cctgccgcctag
DBGET
integrated database retrieval system
