Aricia agestis (brown argus): 121726619
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Entry
121726619 CDS
T09904
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aage
Aricia agestis (brown argus)
Pathway
aage03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aage00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121726619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aage03021
]
121726619
03019 Messenger RNA biogenesis [BR:
aage03019
]
121726619
Transcription machinery [BR:
aage03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121726619
Messenger RNA biogenesis [BR:
aage03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121726619
BRITE hierarchy
Motif
Pfam:
CID
Pcf11_helical
CFIA_Pcf11
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
121726619
NCBI-ProteinID:
XP_041969983
EnsemblRapid:
ENSAAGG00005003932
LinkDB
All DBs
Position
4:9346293..9368968
Genome browser
AA seq
1699 aa
AA seq
DB search
MAKEIADEYASSLSDLTVNSKPLINMLTILAEENIEHAGVIVETVEKHLEKVSPDIKLPV
LYLVDSIIKNVGGAYTQKFAQSIVNMFTKTFKQVDEKVRSQMFKLRETWHEVLPSTKLYQ
LDVKVNLIDPAWPIQAHPQQSNIHVNPNFLKKQPAPATSTTTLTPEEEQMRSIVAKKEQE
LLMLQRKKVEMELEQTRRQLKIAEKTGLIPNVATAPIMPGVVGAPVAMVSPVPALNTVVP
VPDNMHIPAKQRLGPPVNKVAGAGRIAPVSGALAAARRDPRLSRRAPPPRPAPPVAAPPV
AATPVAAPPVSIAVPQMTPVVPPIAPNVFDIKPLERGVTKRKNVITIDVRPEARDPRQPR
DRSRIRKRAEKERKEKEHNADKPEKVDKSDKSEQDKKAVDAYIDRLQIADSKKINKLPPI
PKKVREEKEDPPTKKKKEDNERKKKREKDSSSSSPEKRSKTKEKKVKLKESVEVEEKPAE
PEVVAFKELKNYHKERYMRRNKEKSESPETVPKEDTKTADESKNIGELVAESKDVDLRVL
PPPMAEVAAPIAQKRPSTETVEGKVKKHKVDKFDILFGNEDVDLRQLPQVEETPPPPSIT
ANDASDNEKDSDPDFKMASPVRSPKKDWNEVKEKEEKTNSKKTPSKLDLVRAKLAEATKG
KERIGRPLHFSKSPSIERDRRRTISSEDIDLRSDKVEDFDAQDHKKTISIIMNQAKEQYN
DGQMDKNQYNTLMYQVLQLSEKLKLKEAKQRESLEVSKRKLNAHIENSKVPSPKSSPSDR
NNFGDIDERVLKPNLVEPSENNFNSHQDSDMRIKNHGEMMEPVQPGFLPVPPMMPVPPFM
GPYPMWRGQPGMRMEEFGPRRFRGPNPMGPFYRGKFDKRMPRLPFDPRMAMPLPTPKLGM
CQGESPLRPYERSITPPPLGAPGYGVPPTDFKILEYIDQDPVKTIQIDGIPREIRFYGET
AVIMLDWDDPREIKFLPGCRRVTFDNKDSIVLNFNEGYKQVEIDDQVFDIRFGAPTREMY
INGRWYECYFGGQPVGVIIDGKPRLVHLEGPLPQVDIGKIKRTDLVAGKINLIIDATQIC
PVYLDAKVQKFQVDGQFYTIRFVDCLRTVLINEQPFKVEFGDLPKPIFIGSGKHFVRFSA
LPKNIKPGQIQIANMEGTALSSSAAMAKPVVDAAEVVVPMEVNEDIQRPQKSPSPEGVSQ
GLNMLASLMPTSMAPASSSEYSSAEPIITKSDKIPGLETPSDEKPANSIPLLGNINVNDL
FAKLVATGIVPMAKNPKSEPTVEPKREEPKAKSKEDKSVIQKVDLLKPETLRVKQPGVVA
RLYGGMQCSGCGARFPPEHTVRYSQHLDWHFRQNRRERDSARRAHSRRWHYDLPDWLQYE
EIEDLEEREKSWFETGEGGSAAATTGEGSAPASPPGPSAWAPAAQHHCALCGDRFQQFYN
EDHDEWHLRNSVRHNDKYYHPLCLEDYKASQAKEEPAEESVVEVAPEEKTTEAIEIKDAE
DADESDAESVVEVIEPEKQPDPEPVEIELEDEADDDVVLKAEPVEQLDVDDDDTDDETAA
ARADRDRLVDFTAVKIKQEPVDPDDEPVITAEEEPIIPIIETVHKTVMSSIDGNVQLESA
PPTTLPLGGIRINISKALPTLPLVNDQALEDVSADEEPAPPGEETELEYKLKPSLEGVHF
SRQPPVQKGTELSGLCSIM
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaggaaattgcggacgagtatgcatctagtttgtcagacctgacggtcaacagt
aaacccctgattaatatgcttacgatcctggctgaagaaaacatcgaacacgctggggtc
atcgtggaaaccgtggagaagcatctggagaaggtctctccagatatcaagctgccagtt
ctttacttagttgactctataatcaagaatgtcggcggggcatacacacaaaagtttgct
caaagtattgtcaacatgttcactaagacctttaaacaggtggatgagaaggtaagatct
caaatgttcaagctgcgtgaaacatggcatgaagtgttgccatccaccaagttgtaccaa
ctggatgtgaaagtgaacctgatagatccagcgtggccgattcaagctcatcctcagcag
tctaacatccatgtaaatccaaattttctgaaaaagcagcccgcaccggcaacaagtact
actacattaacgccagaagaagaacagatgcggagtattgttgcaaagaaggaacaagaa
ttgctgatgctgcagagaaaaaaggtggagatggagcttgagcagacaagaagacaacta
aagatagctgagaaaacgggtttgattcccaatgttgccactgctcctataatgcctggt
gttgtcggtgcgccagtcgcgatggtcagccctgtacctgcgctcaacacggttgtacca
gtgccagacaacatgcatatacctgctaaacaacgtcttggaccgccggtaaacaaagtg
gcgggtgccggtcgcatcgcgcccgtgagcggagcactggcggccgctcgcagggacccg
cgcctctcccgccgcgcccctcccccgcgccccgccccgcccgttgccgcgccgcccgta
gccgcgacgcccgttgccgcgccgcccgtctcaatagcggtgccgcaaatgacacccgtc
gtaccgcccatcgcgcccaacgttttcgatatcaagccgcttgagcgcggagttactaaa
cgtaaaaatgtgattaccattgacgttcgcccggaagctcgggacccgcgtcaaccgcgt
gaccgctcgcgaattcgaaaaagagcggagaaagagcgtaaggagaaggagcataatgcg
gacaaacccgagaaagtagacaaaagcgacaaaagtgaacaagataaaaaagcggtggac
gcttacatcgaccggcttcaaatcgccgactcaaaaaagattaacaagttgcccccgata
ccgaaaaaagttcgggaagaaaaggaggatcctccgactaaaaagaaaaaggaggataat
gagaggaaaaagaaaagggagaaggacagctctagttcgtctcccgagaagcggtcgaaa
accaaagaaaagaaagtcaaactgaaggagagtgtagaagttgaagaaaaacctgctgaa
ccagaagttgtggctttcaaggagcttaagaattaccacaaggagcggtacatgcggcgc
aacaaggagaaatctgagagccccgaaaccgtcccaaaagaagatactaagactgctgat
gaaagtaaaaatataggtgaactagtagctgaaagtaaagacgtcgacttgcgcgtctta
cctcctcccatggccgaagtcgcggctcctatcgcccagaagagaccgtccaccgaaacc
gtcgagggaaaagttaaaaaacataaagtcgataagttcgatatactttttggaaacgag
gatgtcgatctccgccagttgcctcaagttgaggaaaccccaccgccgccctccatcact
gcaaacgacgcgtctgataatgaaaaagattccgatcctgactttaaaatggcttcgccc
gttcgatcgccaaagaaagattggaacgaagtaaaagaaaaagaagaaaagactaattca
aagaagacaccctcgaaactagacctcgtgcgagccaaattagccgaagccacgaaagga
aaggaacgtatcgggcgtccgttgcacttcagcaaatctccaagcattgaaagggatcgt
cgacgtaccataagctccgaggatatagacctaagaagcgataaggtggaagatttcgat
gctcaagaccataagaagacgatatcgattattatgaaccaagcgaaggaacaatataat
gatggacaaatggataaaaatcagtacaacactctgatgtatcaggtgcttcaactgagc
gaaaaactaaagttgaaagaagctaagcaaagggagtcactagaggtatccaagagaaag
ctcaatgctcatatcgagaatagcaaagttccttccccgaaatcgtcacctagcgacaga
aataatttcggggatatagacgaaagagttctcaagccaaacctagtagagcctagcgaa
aataatttcaattcccaccaggactccgacatgagaattaaaaatcacggcgaaatgatg
gaaccggtacagccaggttttcttcccgtgccgccgatgatgccggtcccgccgttcatg
ggcccctatccgatgtggagaggccaacccggaatgaggatggaggagttcggtccccga
cgatttaggggtccgaacccgatgggtccattctatagaggtaaattcgacaaaagaatg
ccgagacttcctttcgatcccagaatggctatgcctcttcctactcccaaactagggatg
tgccagggcgaatctcccttgcgaccgtacgaaagatcgatcaccccgccgccgcttggc
gctccgggctacggggttccaccgacggacttcaaaattctagaatacatcgatcaggac
ccggtcaagactattcaaatagacggcataccgagggaaataaggttttacggcgagact
gcagttataatgctcgactgggatgaccccagggagatcaaatttttgccgggttgccgg
cgagtaacgttcgacaacaaagattctatcgtcctcaattttaacgaaggttacaaacag
gtggagatcgatgatcaagtattcgacataagattcggtgctccgacgcgggaaatgtat
attaatgggagatggtacgagtgctacttcggggggcagccggtgggtgtgatcatcgac
gggaaacctcgtctggtgcacttggagggtcccctgccccaggtggatatcggcaagatt
aagcgaacggatctcgtggccggaaagatcaatttaattatagacgctacacagatctgt
cccgtctatttggacgctaaagttcaaaagtttcaagtcgacggacagttctacacgatt
cgttttgtcgactgcttgcggaccgttctgataaacgaacaacctttcaaggtggagttc
ggtgacttgcctaagcctatatttataggttcgggaaaacacttcgtaagattttcagcg
ctgccgaagaatatcaagccgggtcagattcagatcgccaacatggagggcaccgctctg
tcttcttcggccgcaatggctaaaccagttgtcgatgcagccgaagtggttgtgcctatg
gaagtgaacgaagacatccaacgacctcaaaaatctccaagtcctgaaggtgttagtcaa
ggtttgaatatgctagcaagtttaatgcctacgagcatggctccagcgtccagctccgaa
tatagttcagcagaaccaattataacgaaatctgataaaattcctggcctggagactcca
tctgacgaaaaacctgcgaactctattccattgctcggaaatataaacgtcaatgatttg
tttgcaaagctggtagccaccggtattgttcctatggcgaagaaccctaagtccgaaccg
acagtagaaccgaagagggaggaacctaaggcaaagtcaaaagaagataagagtgtcata
caaaaagtagatttgctgaaaccggaaactttgagagtgaagcagccgggagtagtggcg
cggttgtacggcgggatgcagtgcagcgggtgcggcgcgcgcttcccgcccgagcacacg
gtgcgctactcgcagcatctcgactggcacttccgccagaaccggcgggaacgcgactcc
gcccgccgcgcgcactcgcgccgctggcactacgatctgcccgactggctgcagtacgag
gagatcgaggacttggaggagcgcgagaagagctggttcgagactggcgagggtggtagc
gcggcggcgacaacgggcgagggcagcgcgcccgccagcccgcccgggccgagcgcgtgg
gccccggcggctcagcaccactgcgcgctctgcggggaccgcttccagcagttctacaac
gaggaccacgacgaatggcacctgcggaactccgtgcgacacaacgataagtactaccat
ccgctgtgtctcgaggactacaaggcgagtcaagcgaaagaggagccggctgaagaatcg
gtggtggaggtggcccctgaggagaagactacagaagccatcgaaattaaagatgccgaa
gacgccgatgagtcggacgcagagtccgtcgtcgaggtcattgaacccgagaaacagcca
gatcccgagccagttgagatcgagctagaagacgaggcggacgacgacgtggtgctgaag
gcggagccggtggagcagctcgacgtggacgacgacgacacggacgacgagaccgccgcc
gcgcgcgccgacagagacaggctcgtcgacttcaccgccgtcaagatcaagcaggagccc
gtcgacccagatgacgaaccggtcataacagcggaggaggagcctattattccgatcatc
gagaccgttcacaagactgtcatgtcctccatcgacggcaacgtccagctagaatctgcg
ccacccactacgctgccattaggagggattcgaattaatatatccaaagccctcccgacc
cttcccctggtcaacgatcaagcgttggaggacgtgagcgccgacgaggagcccgccccg
cccggggaagaaacggagttggagtacaagctcaaacctagcctggaaggagtacacttc
agccgccaaccgccagtacagaagggcacagaattatccggtctttgttctattatgtaa
DBGET
integrated database retrieval system
