Aricia agestis (brown argus): 121734122
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Entry
121734122 CDS
T09904
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aage
Aricia agestis (brown argus)
Pathway
aage03013
Nucleocytoplasmic transport
aage03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aage00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121734122
03015 mRNA surveillance pathway
121734122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aage03019
]
121734122
Enzymes [BR:
aage01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121734122
5.6.2.5 RNA 5'-3' helicase
121734122
Messenger RNA biogenesis [BR:
aage03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121734122
mRNA cycle factors
Common to processing body (P body) and stress granule
121734122
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
Helicase_RecD
AAA_16
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
121734122
NCBI-ProteinID:
XP_041980478
EnsemblRapid:
ENSAAGG00005005972
LinkDB
All DBs
Position
15:8763421..8770859
Genome browser
AA seq
1035 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGITSSNQ
VNGIGRNDLNAKVSSVTNAIAELQFEEEDEALYSSKELPDHACKYCGIHDPSTVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKMPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDTSVSGY
IYRRLLGHEIEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAIVPGSIYDRARPLRDPLAYVGPERAAMLHAPVPPAAFAR
GPQRQPLGAAQRGGRRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLL
SQDSTYQGGFRRGQY
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtacgggcctagctctcaaacgctgactttcctggatactgaggaa
gcagatcttatcggagctgatactcagggatccgagttcgaattcacggatttcacactt
ccatcccaaagccagacgcaagcgtcacagcacgatcatgggattacatcttcgaaccaa
gtcaacggtattgggcgaaacgaccttaacgccaaagtgtctagtgtcaccaatgcgatt
gctgagctgcagttcgaagaggaggatgaggcactttacagtagcaaggaattgccagat
catgcgtgtaaatactgcggaatacacgatccatccactgttgtcatgtgtaacatatgc
aacaaatggttttgcaatggccgtggtaacacctccggatcccatattatcaaccatctt
gtgcgagctaagcacaaggaagccgctctgcacagagacggaccattgggtgaaaccctc
ttggaatgctactcgtgtggtgctcggaatgtgtttgtgctcggctttatacctgctaaa
gctgattctgttgttgtgctgttatgccgacaaccttgcgctgcacagagttcactgaaa
gacatgaactgggatcaggaacagtggaaacctttgatttctgaccgagcctttttatcc
tggcttgttaagatgccttctgaggcagagcaaatgcgagctcgtcaagtgactccacaa
caaattgggcgtctcgaagaactttggcgtgacaatgttgatgctacctttcaagattta
gagaaaccaggagtggatgaagagccgcaccaagttttattgagatatgaagatggatac
caatatcagaatattttcggtccacttgtaaaattggaagcagactatgataaaagactg
aaggaatcacaaactcaggaaggtattgaggttcgctgggacgttggtctcaataagaag
accattgcatacttcacactggccaagaccgacagtgatatgaagttgatgcatggtgat
gaattgcgtttgagatatgtaggagagctacacaaggcctggtctggagttggccatgtc
atcaaagtccctgataattacggagatgatgtgggactggagttgaagagtggtgctggg
gccccacttgactgtacatctaattttgtagtggacttcatttggaagagcacatccttt
gacaggatgcagctggctctccgcaagttcgcggtggacgacacctcagtgtcaggctac
atctaccgtcggctgctgggacacgaaattgaggaggtgctgttccgagtccacctgccc
aaacacttcagcgcacccaacctgcccgaccttaatagatcacaggtgtacgcggtcaag
cacgcccttcagcggcccttgtcccttattcaaggaccaccaggtaccgggaaaactgtg
acatcagctacaatagtataccaactagtacgtcaaaacggcggacccgtcctcgtgtgc
gccccctccaacaccgccgtggatcagctgaccgaaaaaattcatagaaccggcctgaaa
gtggtccgtctctgcgccaaatccagggaggctatggagtcctccgtgtcgttcctagcc
ctacacgaacaagcgcgagctttgggttcggccgacagcgagctgcgcaaactgacgcgc
ctgaaggaggaggccggcgaactgtcggcggccgacgagagaagatatcgcgccctccgc
cgcgcggcagagcgacgcctgctcgacgccgccgacgtcgtgtgcaccacctgcgtcggc
gccggcgacccgcgcgtcgcccgcatgaggttccagtccatcctcatcgacgagggcatg
cagtccactgagcccgagtgcatggtgcccgtcgtcctcggcgcccgccagctcatcctc
gtcggcgaccactgccagctgggccccgttgtcatgtgcaagaaggccgccaaggccggc
ctcagccagagcctgttcgagcgcctcgtcgttctcggcattcggccgttccgcctggag
gtgcagtaccgcatgcacccggagctctcccggttcccgtcggacttcttctacgaggga
tccctccagaacggggtcagcgccgaggagcgccgcctccacaagatcgacttcccgtgg
ccccgcccggatcgacccatgttcttctacgtgacccaggggcaggaggagatcgcagga
tcgggaacctcgtacctcaatcggacggaggcagcgaacgtcgagaaactcacgacgcgc
ttcctcaaggcgggcgtccgccccgagcagatcggcatcatcacgccttacgaggggcag
cggagctacctcgtccagcacatgcaataccagggcagccttcacgcaaagctgtaccag
gagatcgaggtcgccagcgttgacgccttccaggggcgggagaaggacatcatcatcatg
tcgtgcgtgcgctccaacgagcaccagggcatcgggttcctgagcgacccgcggcgcctg
aacgtcgcgctcacccgcgccaagtacggcctcatcgtggtcgggaaccccaaggtgctg
agcaagcagccgctgtggaaccacctgctggcgttctacaaggagcgccgcgtgctcacc
gaggggccgctgtcgaacctcaaggagtccgcgatccagttcgccaagcccaagaagctg
gtgaacgcgcagaaccccggctcgcacttcatgtcgacgtcgatgttcgatgcgcgggag
gcgatcgtgcccggctccatctacgaccgcgcgcggccgctccgcgacccgctcgcctac
gtgggcccggagcgcgcggccatgctgcacgcgcccgtgccgcccgccgccttcgcgcgc
ggcccgcagcgccagccgcttggcgccgcgcagcgcggcgggcgcaggcggcccccgcgc
ctgtcgcaggagccgctgtcgcagcagccgccgctgtcgctgtcgcagggcgcctcgcag
ccagacttcagccaggagtcggcggcgcccgactgcccgtcgcagcccgacgggctcctg
tcgcaggactccacgtaccagggcgggttccggcgcggccagtactga
DBGET
integrated database retrieval system
