Anatilimnocola aggregata: ETAA8_31400
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Entry
ETAA8_31400 CDS
T07027
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aagg
Anatilimnocola aggregata
Pathway
aagg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ETAA8_31400 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aagg03400
]
ETAA8_31400 (ykoU)
Enzymes [BR:
aagg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ETAA8_31400 (ykoU)
DNA repair and recombination proteins [BR:
aagg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ETAA8_31400 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
COXG
CHDNT
Motif
Other DBs
NCBI-ProteinID:
QDU28048
UniProt:
A0A517YCV4
LinkDB
All DBs
Position
complement(3980053..3982734)
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AA seq
893 aa
AA seq
DB search
MPLNLQFLEPSADSCSLAGVSMSLAEYQRKRHFRKTAEPKGTGRRKKQAGNAKLTFVVQK
HAASRLHYDVRLELGGVLKSWAVPKGPSLNPSQKRLAVAVEDHPLEYAKFEGTIPAGEYG
AGEVIVWDRGIWTPVNDPRESLQKGNLEFELHGEKLSGNWRLIQLRGREGGKNWLLIKRH
DAAANKDGTELTDSSPESVITGRSLATIVQGNPAQYRQTRRTTEKERRGAPKVAARAKTR
APTKRNSKGTTFSGKQKRVAPQLAKLATIVPTGDEWLHEIKYDGYRLICTLSNGEAKLWT
RNRLDWTHRFSGISAAIVELSASSAILDGEIVALSENGVSNFQALQNALQGSESQPLVYY
VFDLLELNGEDLRPLPLIERKRRLKALLPKSGAGRLRFSDHLSGDGSTFLAHSCRLGLEG
IISKRGDRPYSSGRSNDWLKIKCLKQEELVIGGFTASAADNRRFGTLLLGYFHGRKFKYA
GRVGTGFDSRLLTSLRAELDERIVQECPFDPIPTRERGPEVRWVLPQLVAQIQFTGWTEE
AVLRHPVFLGRREDKTARSVGPPESLAPDRESNPLPTRKQAIKSSPSKSKSAIDFPFTNP
ARILYPDLGLTKLDLASYCQQVADWMLPYLENRPLSLLRCPEGQAKSCFFQKHAAAGTPA
ALRRIEIDEKHERVTYLVADDLPGLLSLAQMGVLEIHVWGSRADRLEYPDWLVFDLDPAP
DVPWSKVVETAFLIRDLLSALDLQTFPKLTGGKGLHVVAPLSPRRADWKKAKEFSQTIAQ
LLAQEYPDCYVAKMSKAARRGKIFIDYLRNDRGSTAIAPYSTRAKSQAPVSMPISWKELS
PRLASDFWTVQNARQRLESLKRNPWQEFFQLKQKLPKIDRNLRRIISNAIADS
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgaatctgcagtttttggaaccttccgcagactcttgttccctcgctggtgta
tccatgagcttggccgaatatcagcgcaagcgccactttcgaaagaccgccgagccgaaa
ggaacgggacgacgcaagaaacaagcgggaaacgccaaactgacgtttgtagtgcaaaag
cacgccgcttcacgcctgcattatgacgttcgcttggaactgggtggcgtcttgaagagc
tgggcagtgcccaaagggcctagcttgaatccatcacaaaaacgactagccgtcgctgtg
gaagatcatccactggaatacgccaagttcgaaggaacgatccccgcgggtgaatacggc
gccggcgaagtcatcgtttgggatcgcggcatttggactccagtgaatgatccgcgcgaa
tccctccagaagggtaacctggaattcgagttgcatggcgaaaagctctccggcaattgg
aggctgattcaactccggggacgcgaggggggaaagaattggctcctgatcaaacgccac
gatgctgcggcaaacaaagatggcacggaattaactgactcctcgccggagagcgtcatt
accggacgaagtctcgcgacgatcgtccaaggcaatcccgcccaataccgacagacacgg
cggactacagaaaaagagaggcgtggtgccccaaaagtcgccgcgagagcgaagacgcgg
gcaccgacaaagcgaaactccaaaggcacgactttctctggcaaacagaagcgcgtggct
ccgcaattggcgaaacttgcaacgatcgttccaactggcgatgaatggctacatgaaatc
aagtacgacggttatcgattgatttgcacgctctcaaatggtgaagctaagctctggact
cgcaatcgacttgactggacccaccgattttctggaatctctgcagccatcgttgaatta
tctgcaagttcagcgatcctggatggagagattgtggcgctgtctgaaaatggcgtcagt
aactttcaagcgttgcaaaacgctttgcagggaagtgagtcacagccgctagtttactac
gtcttcgatctgctggaattgaatggtgaggatctgcgtcccttgccactcatcgagcgg
aagcgacggctaaaagcactgttgcccaagtcaggcgctggtcgattacgttttagcgat
cacctatccggtgacggcagcacattcttagcgcacagttgccgactggggctcgaagga
ataatctcgaaacgcggcgatcgcccctattcatctggtcggagtaacgattggcttaag
atcaaatgcctaaagcaggaagaactcgtcatcggtggctttacggcttcagctgcggac
aatcgtagattcggtacgttgctgctcggttattttcatggacgcaaatttaagtatgcg
ggacgcgtggggacgggtttcgattcccgactgctgacatcactacgcgcagaactggac
gaaagaattgtccaggagtgtcccttcgatccgattcctacccgcgagcgcggccccgag
gtgcgctgggtgctaccgcaactcgtcgcccagattcagttcacagggtggactgaagaa
gccgtgttgcggcatccggttttcctcggtaggcgtgaagataaaacggcgcgctccgtt
ggtccaccagaatcattggctcccgatcgagaaagcaatccgctgccaactcgcaagcaa
gctatcaaatcttctcccagcaaatccaaatcggctatcgactttcccttcaccaatcct
gctcgcattttgtatcccgacttaggtctcacgaaactcgatctggcgagttattgccag
caagtcgcggactggatgctgccgtatttggaaaatcgtccgctcagtttgctccgctgt
cccgagggacaagccaagtcgtgcttctttcaaaaacacgctgccgcaggcacgccggct
gccttgcgacgcattgaaattgacgagaagcacgagcgcgtaacctatctcgtcgcggac
gatctgccgggcctgttgtcgcttgcgcagatgggagtactagagattcacgtttggggc
tcgcgcgcagaccgtctcgagtatcccgattggctggtgttcgatcttgatcccgcgccc
gatgtgccgtggagcaaagtggttgaaacagccttcttgattcgtgacctgctttccgca
ctcgatctgcagacatttccgaaactcactgggggcaaggggctacatgtcgtcgcccct
ttgtcaccgaggcgcgctgattggaaaaaggcgaaggagtttagccaaacgattgcccag
ctgcttgcgcaagaatatcccgactgctacgtggccaaaatgtcgaaggctgcccgtcga
ggaaagatctttatcgattacctgcgaaacgatcgtggttctactgcaatcgcaccctat
tccactcgggccaagagccaagccccggtctcgatgcccatcagttggaaagaactgtcg
ccacgactggcgtccgatttctggacagtacaaaacgcccgacagcgattggaatcactt
aagcgaaatccctggcaggagtttttccagctgaaacagaagctgcccaagatagaccgg
aatttaaggcgcataatttcgaacgctatcgcggacagttaa
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