Aureimonas altamirensis: LUX29_17650
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Entry
LUX29_17650 CDS
T07762
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aalm
Aureimonas altamirensis
Pathway
aalm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aalm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LUX29_17650 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aalm03400
]
LUX29_17650 (ligD)
Enzymes [BR:
aalm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LUX29_17650 (ligD)
DNA repair and recombination proteins [BR:
aalm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LUX29_17650 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UHD44833
LinkDB
All DBs
Position
3651167..3653740
Genome browser
AA seq
857 aa
AA seq
DB search
MSGPLQFNRPNGFEAMNDSLLSPYRKKRDFQHTNEPTGGCASANGLLFVVQKHDATRLHY
DFRLEWDGVLKSWAVTRGPSLDPADKRLAVQTEDHPMDYGNFEGTIPMGQYGGGTVMLWD
TGTWEPVGDAAEGFADGNVKMQLHGTKMQGLWALIRMKRRPGEKRDNWLLIKEKDDVAST
SRNILRLDRSAKTGRTLHQIASGAAAGKPAAAKASARQPSARQPSACQPSARKQKQAALP
AFRPVQLATLSSTAPTSDAWLHEVKYDGYRILIARGGDKVRLYTRNGKDWTDKFGSLLRH
VEALPARSFLIDGEVVAFDGAGRTDFSALQEALTDGGALSCFCFDLLEHDGQDLTGKPLI
ERKAALESLMAGTHGSALHYSPHILGHGGDVLAELCREGLEGVVSKRADAPYMAGRSKAW
LKSKCGRRQEFVIGGYSTSNKPGRPFSSILVGVNEGKKFVYRGRVGSGFDGKALDNLAER
FASLSREDSPFDTVPADIRRGAHYLDPMLVAEIDFAELTREGHIRHGVFKGLREDKPAKR
VVEEKPMDEVKPRAKGRRKAEGKPGDIEGVRLTSPERVVFEGQGITKRDLAEYYVMVADR
MLVHAGKRPLSLVRCPQGGQKACFFQKHDTGGFPPQMGHVDIREKDGENAVYLSLDGLGS
ILAAVQMGTMEFHIWGAHNDDVDKPDRLVFDLDPDESLGFADVRQAALELRERLADGGLT
SFPMVTGGKGIHIVVPLVRRQDWPTLKDFARGFAEAVTRDEPERFVATMSKARRKGRIFI
DWLRNERGSTAIAPYSTRARKDAPVATPVSWDELGALTSAAAFHLGDMARRLEQADPWAE
YASVRQSITRRMVETLS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgtccggacctctgcagttcaaccggccgaacggatttgaggcgatgaacgactcgctg
ctttccccctatcgcaagaagcgcgacttccagcacacgaacgagcccaccggcggctgc
gcctcggcgaacggccttctcttcgtggttcagaagcatgatgccacccggctgcattac
gatttccggctggaatgggatggcgtcctgaagagttgggccgtgacgcgcggaccgagc
ctcgaccctgcggacaagcgtctggcggtccagacggaagaccatccgatggactacggc
aatttcgaaggcaccatacctatggggcagtatggcggcggcacggtgatgctgtgggac
accggcacgtgggagccggtcggagacgcggccgagggttttgccgatggcaatgtaaaa
atgcagcttcatgggacgaagatgcagggtctgtgggcccttatccgcatgaagcggcgg
ccgggcgaaaaacgcgacaactggctgctgatcaaggaaaaggatgatgtggccagcacg
agccgcaatatcctgcgcctcgaccgaagtgcgaagacgggacgaaccctccatcagatc
gcatccggcgccgccgccggcaagcctgccgcagccaaggcgtctgcccgccagccgtct
gcccgccaaccgtctgcctgccagccttctgcccgaaagcagaagcaggctgcgttgccg
gcctttcgacctgtccagctggcgacgctctccagcacggcgccgacgagcgacgcgtgg
ctgcatgaggtaaaatacgacggttaccgcatcctgatcgcgcggggcggcgacaaggtg
cggctttatacacgcaacggcaaggactggaccgacaagttcggcagcctgcttcggcac
gtcgaggctttgccggcgagaagcttcctcatcgatggagaagtcgttgcctttgacggc
gccgggcggacagacttttcggccctgcaggaagcgctgaccgatggcggcgcgctgtcg
tgcttctgtttcgaccttctcgagcatgatggacaggacctgaccggcaagcccctcatc
gagcgcaaggccgcccttgaaagcctaatggcaggcacgcatggatctgccctccactat
agcccgcatattctgggccatggcggcgatgtgcttgccgaattatgccgcgagggcctg
gaaggtgtcgtctcgaagcgcgccgatgctccttacatggcaggcaggtccaaagcctgg
ctgaaatcgaagtgcggccgccggcaggaattcgtcatcggtggctattccacctccaac
aagcccggccgcccattctcgtccatccttgtcggcgtgaacgagggaaagaagttcgtc
tatcgcggccgcgtcggctccggcttcgacggaaaggccctcgacaacctcgcggaacgc
tttgcatccctgtcgcgggaagacagcccattcgacaccgtgccggccgatatccgtcgc
ggcgcgcattaccttgaccccatgctggtggcggagatcgatttcgccgaactcacccgc
gagggtcatatccgccatggcgtcttcaagggtttgcgcgaagacaagccggccaagcgg
gtggtggaggagaagccgatggacgaggtcaagccgagggccaaggggcgcaggaaggca
gagggcaagccgggcgatatcgaaggggttcggctgacatcgccggagcgcgtcgtcttc
gagggacagggcatcaccaagcgcgaccttgccgaatattacgtcatggtagccgaccgg
atgctggtccatgcgggcaaacggccgctatccctggtgcgctgcccgcagggtggccag
aaggcctgctttttccagaagcacgatacgggcggatttccgccgcagatgggtcacgtt
gatatccgcgagaaggatggcgaaaacgccgtctacctgtcgctggacgggctcggcagc
atcctggcagccgtgcagatgggcacgatggagtttcacatatggggtgcgcataatgac
gatgtcgacaagccggaccggctggtcttcgacctcgaccccgatgagtcgcttggcttt
gccgatgtccgccaggccgcactggagctgcgcgaacggctggccgatggcggcttgacg
agttttccgatggtaaccggcggcaagggcatccacatcgttgtcccactggtgcggcgg
caggactggccgacactgaaggatttcgcacgcggttttgccgaggccgttacccgcgac
gagccggagcgtttcgtggcgacgatgtccaaggcccggcgcaaggggcgcatcttcatc
gactggctgcgcaacgagcgcgggtcgacggccatcgcgccctattccacgcgcgcgcga
aaggacgcgccggtggcgacgccggtaagctgggacgaactcggcgcgctgacatccgcg
gcggcgtttcaccttggggatatggcccggcgtctcgaacaggccgacccctgggccgaa
tacgcctccgtgcgccagtcgattacacgtcgcatggttgagacattgtcttga
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