KEGG   Alternaria alternata: CC77DRAFT_1007425
Entry
CC77DRAFT_1007425 CDS       T05291                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
aalt  Alternaria alternata
Pathway
aalt03030  DNA replication
aalt03410  Base excision repair
aalt03420  Nucleotide excision repair
aalt03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CC77DRAFT_1007425
   03410 Base excision repair
    CC77DRAFT_1007425
   03420 Nucleotide excision repair
    CC77DRAFT_1007425
   03430 Mismatch repair
    CC77DRAFT_1007425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aalt03032]
    CC77DRAFT_1007425
   03400 DNA repair and recombination proteins [BR:aalt03400]
    CC77DRAFT_1007425
Enzymes [BR:aalt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CC77DRAFT_1007425
    6.5.1.6  DNA ligase (ATP or NAD+)
     CC77DRAFT_1007425
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CC77DRAFT_1007425
DNA replication proteins [BR:aalt03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    CC77DRAFT_1007425
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     CC77DRAFT_1007425
DNA repair and recombination proteins [BR:aalt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CC77DRAFT_1007425
   NER (nucleotide excision repair)
    Other NER factors
     CC77DRAFT_1007425
   MMR (mismatch excision repair)
    Other MMR factors
     CC77DRAFT_1007425
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PNKP_ligase
Other DBs
NCBI-GeneID: 29109072
NCBI-ProteinID: XP_018387342
JGI: 1007425
UniProt: A0A177DS01
LinkDB
Position
Unknown
AA seq 893 aa
MAPKQATLGKFFGKPNGDATKQQSKLSFSTRPKPVKNEVETKEEPRSSPEEVKEGQNDDV
DSDAEVRAPVKKEVETDDDAMEVDSTASDTGKKRQIKEEEEEESEEEPPTKRQRRKTTEG
KNSPKKAPAKPKADKAPEKSKKRAAKPKAATPEDDDEEVSAPTKVAKSKKGAESSPVPVE
DDAVSNKEEEDEVGSSEEEPEEVKTKARKKVQTTLSSNIKDPYPDWKPGEPVPYAALCTT
FSKIEMTTKRLEILAHCSLFLRQVLRLTPSDMLPTVMLMVNKLAADYAGIELGIGESLIM
KAISESTGRNLQQIKSDQNEIGDLGLVAAKSRSKQPTMFKPKSLTIEGVRKGLIGIATVE
GQGAQGRKVDGIKKLLSAADAHNAGKHIDIEKDKGGPSEAKFIVRTLEGKLRLGLAEKTV
VVAVAQAMIFHDMSQEGKTPSTADLAKAEAMLKTVYSELPSYEVIIPAMLEHGIMNLREN
CRLQPGVPLKPMLAKPTKSITEVLDRFEGKDFTCEYKYDGERAQIHFVAHDAKQEGEKME
LATIAPSAGKSDRGVSNIFSRNSEDLSKKYPDILAKLPTWVKEGTKSFVLDCETVAWDMV
EKKVLPFQQLMTRKRKDVKVEDVKVKVCVFAFDILYLNGEALVTKSFRERREHLNEVFVP
VEGEFAFAKYGNTNELEEIQTLLEDSVKSGSEGLMVKMLDGPESFYEPSKRSQNWLKVKK
DYLAGVGDSLDLVVLGAYYGKGKRTSWYGAFLLACYNPSTEKYETVCNIGTGFSEAILET
LHKTLSEIVIDRPKPFYTHSTGNKDQPDVWFEPRYVWEVKTADLTLSPRYRAAADEVSGG
GKGVSLRFPRFIKERDDKKPDQASSSRMIAEMYQRQESVSKNKGPSADDDFEY
NT seq 2682 nt   +upstreamnt  +downstreamnt
atggctcccaagcaggctactctcggaaagttcttcggaaaacccaacggcgacgcaaca
aagcagcaatcgaaactgtccttttccacaagaccgaagcctgtaaagaacgaggtagag
accaaagaggagcctcgctcatcgccagaggaagtgaaagaggggcagaatgacgacgtt
gattcggatgcagaagtcagggcaccggttaagaaagaggtagagacggacgacgatgcc
atggaagtcgacagtacagcatctgacacgggaaagaagaggcagatcaaagaggaagaa
gaggaagaatccgaagaagagcccccgacgaaacgccaacgacggaaaactaccgaagga
aagaacagcccgaagaaagctcctgcgaagccaaaggccgacaaagcaccagaaaagtca
aagaagagggccgctaaaccgaaagctgcgacaccagaagatgacgacgaggaagtctca
gcgccaaccaaggttgcaaagagcaagaagggggccgaatcgtcacctgtgcctgtggag
gatgatgctgtttcaaacaaggaagaggaagatgaggtggggagctcagaggaggaacca
gaagaggtcaagaccaaggcgaggaagaaggtccagactactctttcgtccaacatcaaa
gacccatatcctgactggaaacccggtgagccagtgccatacgccgcactctgcacaacg
ttttcgaaaatcgagatgacgacaaaacgtctcgagattctcgcccactgctcacttttc
cttcgtcaagtgttacgattaactccatctgatatgctaccgactgttatgctaatggtc
aacaaactcgcagccgactacgcaggcatcgagctgggtatcggcgagtctcttatcatg
aaggctatttctgagagtaccggacgaaacttgcaacaaatcaagagtgaccagaatgag
atcggtgatctagggctcgttgcagcgaagagtcgctcgaaacaacccaccatgttcaag
cccaagtctttaaccatagaaggcgtacgaaagggactaataggcattgctactgttgag
ggacagggagctcaagggcgcaaggtcgacggcatcaagaagctcctgtcagcagccgat
gcgcacaacgctggaaagcatatcgatatcgagaaggacaagggtgggcctagcgaagcc
aagttcatcgtccgaacactagaaggaaaacttcgattaggtcttgctgagaagactgtc
gtagtcgctgttgcgcaagctatgatattccatgacatgtcccaggagggcaagacgcca
tcaacagcagacttggcaaaggccgaggccatgctgaaaacagtctatagtgagcttccc
agctacgaagtcattatccccgcaatgctcgaacatggtatcatgaacctgcgagagaac
tgccgcctacagcctggtgtaccgcttaagcctatgttggcaaaaccgacaaagtcaatt
acagaagtgctcgatcgcttcgaaggtaaagacttcacctgcgaatacaagtacgatggt
gagcgggcgcagatacattttgttgcgcatgacgcaaagcaagaaggtgaaaagatggag
ttggcaaccatagctccaagcgctggcaagagtgaccgaggtgtgtcgaacatcttctct
cggaattctgaggatctatcgaagaagtaccctgatattctcgccaaactaccgacttgg
gtcaaagaaggtacaaagagcttcgttcttgattgcgagacggtggcttgggacatggta
gaaaagaaagtgttaccgttccagcaactcatgacgcgaaagaggaaagatgtcaaggtc
gaagacgtcaaggtaaaagtctgcgtcttcgctttcgacatcctctacctgaacggcgag
gcccttgtgaccaagtccttccgtgagcgtcgtgaacatctcaatgaagtgtttgtacct
gtcgaaggagaattcgcgttcgccaagtatggtaacaccaacgagttggaagagatccaa
accctccttgaagactccgtaaagtcaggaagcgaaggactcatggtaaagatgttagac
ggaccagagtccttctatgagccatccaagcgctcacagaattggctcaaggtcaagaaa
gactatcttgctggtgtcggcgactctctggatctcgtcgtcctaggagcgtactatggc
aagggcaagcgtacaagttggtatggcgccttccttctcgcctgctacaacccctcgacc
gagaagtatgagacagtatgtaacattggtaccggcttctcggaggccattctcgagacc
ttgcacaagacattatccgaaatcgttatcgaccgccccaaacccttctacacacactcc
accggcaataaagaccagcccgacgtctggttcgagccgcgctatgtctgggaagtaaag
acggccgatctgaccttgtcaccgcggtacagagctgctgcggatgaggtctctggtggt
ggcaagggtgtcagtttgaggttccccaggttcatcaaggagagagatgacaagaagcca
gaccaggccagctctagtcgcatgattgctgagatgtatcaaagacaggagagtgtcagt
aagaacaaggggccaagtgctgatgatgactttgagtattaa

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