Alternaria alternata: CC77DRAFT_1022835
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Entry
CC77DRAFT_1022835 CDS
T05291
Name
(RefSeq) ATP-dependent DNA ligase
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aalt
Alternaria alternata
Pathway
aalt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CC77DRAFT_1022835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aalt03400
]
CC77DRAFT_1022835
Enzymes [BR:
aalt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CC77DRAFT_1022835
DNA repair and recombination proteins [BR:
aalt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
CC77DRAFT_1022835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
LIG3_BRCT
PTCB-BRCT
Bac_globin
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
29111143
NCBI-ProteinID:
XP_018383382
JGI:
1022835
UniProt:
A0A177DFC9
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MAEDTPMADAEAVRENTLMYGHDDELDDKYPTRPINLHKTLPFHTLFTELFNPLMETQKR
KQPVGARRRVGPHGHSNMSPHEAKRNIIERFIATWRKQVGNDFFPAMRLIIPEKDRDRAM
YGLKEKTIAKVLIKLTRIDPNSDGAKHMLNWKLPGQLNKASASTAGDFAGRCYEILSTRQ
LKTEYSDMSIAEVNNALDKLSQIGAEEEQVKIFQRFYRRMNAEEMTWLIRMVLRQMKIGA
TEKTILDIWHPDAETLFNISSNLRRVCWELFDPEVRLAGEDTGLSLMQCFQPQLAQFQDK
VGNFEKLVTRFQGNTDDDTFWIEEKLDGERMQLHMVEDPDAPGGRTFGFWSRKAKDYAYL
YGKHFQGDEAGALTRFITDAFGKNVRNIILDGEMITWDMDRDHIVGFGTLKTAAISEKEN
KTDKNTGQRPVFRVFDCVFLNDKLLTQYTLRDRRRALESAVKGVHRRLEIHPYTEARSHT
EIEPALRKVVADSSEGLVLKNPRSMYRLNQRNNDWMKVKPEYMSEFGESLDCIVVGGYFG
SGHRGGAHSSFLCALLTNKDAKKGDLKYEHCWSFFKVGGGFAQQDYADIRGRTEGKWHNW
DPRRPPPFIELGGHEHNRQHERPDQWIRPRDSVVLECKAASVEGTDKFRFSLTLRFPRFK
GLKKDKRWDQALSVQEFLEVKSRAETEKSEKEKEFKIEQSRRKKARISKKPLTVVGNDAV
ATPYAGPASKVFEGLSFFIMTEQIHPTKKSKPDLEALVKANGGKIVQRDSMDKDLVIVAD
KRLIKVASLEKRATNNIIKPIWIQDCIKQNEIDCAPLPYLLPFEPNRHMFYLHDDDQLDF
ENNVDEYGDSFARDIADVDDMRKLLAGVGAGSDNDSAFERQGFLDQLEDHGESLAHLKTR
MFGTVKAAFDSNPIDASGMLKAQLSKNYIRFGGGSVTDRIVEEGVTHVVVPNEHSSAKSV
KAKVTGLARIVGVAWVEKCWEEGTMLDEERFQWG
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagatacaccaatggccgatgccgaggcggttagggagaacacgctcatgtac
ggccatgatgatgagctcgacgacaagtacccaacacgtccgataaacctccacaaaaca
cttcccttccataccctattcacggaactattcaatccgcttatggaaacacaaaaaagg
aagcagcctgtgggagctcggcgaagagtcggaccacatggacactctaatatgtcacct
cacgaagcgaaacgtaacatcatcgaaagattcattgcgacttggcgcaagcaagtgggc
aatgacttctttcccgcaatgcgtctcataatcccggaaaaggacagagatcgagccatg
tacggtctgaaagagaagacaattgccaaggtcttgatcaaacttacaaggatcgacccc
aactctgacggtgccaaacatatgctgaactggaagctacctggtcagctgaacaaggct
tcggcatcaactgccggcgacttcgctggacgatgctacgagatcctgtcaacccggcaa
ctcaagaccgaatacagcgacatgagtatcgcagaggtcaacaacgctctagataagcta
tcacagattggcgccgaagaagagcaagtcaagatcttccaacggttctatcgaaggatg
aacgctgaggagatgacctggctcattcggatggtccttcgccagatgaagattggagcc
actgagaagaccattctagacatctggcatccagatgcagagacgttattcaacatctct
tcaaaccttcgaagagtgtgctgggaactatttgaccctgaggtccgtctggcaggcgaa
gacactgggctgagcttgatgcaatgcttccagccacaactggctcagtttcaggataag
gtaggtaactttgagaagctggtcacaagatttcaagggaacaccgatgacgataccttt
tggattgaagagaagcttgatggagaacgtatgcagcttcacatggttgaggatcctgac
gcgccaggcggtagaacttttgggttctggtcgcgaaaggccaaagactatgcgtacctc
tacggtaaacacttccaaggcgacgaagctggtgcactcacacggttcataacagacgcc
tttggcaagaatgtgcggaacatcatccttgatggcgagatgatcacctgggatatggac
cgcgatcacattgttgggtttggaactctcaagaccgcagctatatccgagaaagaaaac
aaaacggacaagaacactggtcagcgaccggtcttcagggtttttgactgcgtattcctg
aacgacaagctactcacacaatacacgctacgtgatcgccgtcgcgctctggaaagtgcc
gtcaagggcgtacatcgtcgtctggagatccacccgtacaccgaggcgcgctcgcataca
gagattgaaccagcactacggaaggtcgttgctgattcttcggaaggtctggtgctgaag
aacccacgttctatgtatcggctaaatcaacgcaacaacgattggatgaaagttaagcca
gaatacatgtccgaattcggcgagtcgctcgactgcatagttgtcggcgggtactttggc
tctggacatcgtggtggcgcccactcatcctttctttgcgcactgcttacgaacaaagat
gcaaagaaaggcgacctgaagtacgaacattgttggtcgttcttcaaagttggaggcgga
tttgctcaacaagactatgctgacatacggggccgaacggaaggcaagtggcataattgg
gatcctcgacggccacctccatttattgagttaggcggtcatgagcacaatcgacaacac
gagcgaccagatcaatggatcagacccagagattctgtcgttctggaatgcaaggcagca
agtgtggaaggcaccgacaagtttcgcttctctttaacgcttcgctttcctcgcttcaag
gggctcaaaaaggacaaacgctgggatcaggcactgtcggtacaggaatttctggaagta
aagagcagagctgaaactgagaagtcggaaaaggagaaagaattcaagattgagcaatca
cgcaggaagaaggcgagaatatcgaagaagccactcactgtggtaggtaacgatgccgtt
gctacaccatatgcgggtccagcatcgaaggtatttgagggcctgagctttttcataatg
actgagcaaatccacccaacgaagaagtcgaaacccgatcttgaagcactggtcaaagcc
aacggtggcaagattgtgcagcgcgattcgatggacaaagaccttgtcatcgtagcggac
aagagactgattaaagttgcatcactcgagaaacgcgccacgaacaacatcatcaagcct
atctggatccaggattgcatcaagcagaatgagatagactgtgcccctttaccatacctg
ctcccattcgagccaaaccgacatatgttctacctccacgatgacgatcagctcgacttc
gagaacaatgttgatgagtatggagattcgtttgcgcgcgacatagcagatgtagatgat
atgcgaaagctgttggctggtgtaggagcagggtcagacaacgactcagcatttgaacga
caaggcttcctagaccaactagaagaccacggagagtcacttgcgcatctcaagacacgc
atgtttggcacagtaaaagctgcgtttgacagcaatcctattgatgctagcgggatgctc
aaagcccaactatcgaagaactatattcgattcggcggtggttcagtgactgatcggata
gttgaggaaggagtcacacatgttgttgtaccgaacgaacactcttcggccaagagtgta
aaggctaaggtcactggacttgccaggattgtgggtgtcgcgtgggtagagaagtgctgg
gaggaaggcactatgttggatgaggagcggtttcagtgggggtga
DBGET
integrated database retrieval system
