Alternaria alternata: CC77DRAFT_252412
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Entry
CC77DRAFT_252412 CDS
T05291
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aalt
Alternaria alternata
Pathway
aalt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CC77DRAFT_252412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aalt03021
]
CC77DRAFT_252412
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_252412
Transcription machinery [BR:
aalt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CC77DRAFT_252412
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
CC77DRAFT_252412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CFIA_Pcf11
CID
VHS
Motif
Other DBs
NCBI-GeneID:
29116472
NCBI-ProteinID:
XP_018382871
JGI:
252412
UniProt:
A0A177DE74
LinkDB
All DBs
Position
Unknown
AA seq
693 aa
AA seq
DB search
MSLPAAEVAADFRDALQDLRMNSRPEISNLTLIAKENTEYAEAISNELQKHIQSTRPEWK
LPALYVLDSIVKNVGTPYTVYIGRNLYRTFMDAYLVMDQNTRKNMEGLLKTWKMPVPESM
DPRPVFQADVTQDIENALAKFRAAQQQIRPQHALPPRPPSLNVAWRGTSTPPQTGPRYAA
PNDPRARPTQPPTPQYGPPSHTATPPTYQQPQQHAQPMSSVDLADLKVEVTQLISATQNM
FAHNPADAALRTKLSALLSLKQILDTQTLPPQQLEAVRQQVRALAPPPAPTPTFAPSTPV
YPPQQAMPPGYPPNFSPMGAPPSSAPPNVAQLLAGFRPPQQSTPQPASTPNPPALNLAEL
LKRVSSPAQSNSVPAPAPFQMPFQGFPPPVSTPVPAPQAPPPTQSATPTANLAALLAQFS
KPGAAPPSMPPTPVQSTPLPQLPPQPPAAPPALGSAEWLLKALSGVPGGMPANSTPVASQ
PTTQQAPAPISLTDQIELTTASMKKPRLHLISRLYEAKPNICATCGRRFESTPEGKEKKA
RHMDWHFKVKDPDAGKRGVHRSWYIPEKEWIEYREVDETSPNHSNDASSGNGAAKPKKQA
KDRYVSVPQDVTLQQAPCPICQDKFETQWNVEANDFVWMDAVSVGGKIYHATCFEEVYGK
GVGIETPGTPDSVLGKRKADIGANGDGKKVRAY
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgccagctgctgaagtggctgccgactttcgggatgccttgcaagatttgagg
atgaacagcagacctgagattagcaatctaaccctcatcgccaaggaaaacacagaatac
gcggaagctatatccaatgagcttcagaagcatatccaatcgacacgccctgaatggaaa
ctcccagccctctatgttcttgattcgattgtcaagaatgtcggcaccccatacactgtc
tacatcggccgcaacctttatagaaccttcatggacgcctatctcgtcatggaccagaac
actcgcaagaacatggaaggccttttgaagacgtggaagatgcctgtgcccgagtccatg
gacccacgtcctgtattccaggccgacgtgacgcaggatattgagaatgcactggctaag
ttccgcgcagctcagcagcagattcgaccacagcacgcgcttccacctcgtcctccgtcg
ctcaacgtcgcttggagaggtacgtcaacgccgcctcaaactggcccgcgttatgctgct
cctaacgacccacgtgctcgaccaacacaacctccgactcctcagtatgggccaccatct
cacacagccacaccacctacataccaacagcctcagcaacacgctcagcccatgtcatcg
gttgaccttgctgacttgaaggtggaagtaactcagctcatcagtgcaacacagaacatg
ttcgcacacaacccagctgatgctgctctacgcacaaagttgtccgcactgttgtccttg
aagcaaatcctagatacacagacattacctcctcagcaattagaggctgtacgccaacaa
gttcgagcattggcacctccaccagcgccaacaccgacatttgctccttctacgccagta
tatccgccacaacaagcaatgcctccaggttatccgcccaacttttctccgatgggtgca
cctccgagcagtgctccaccaaacgtcgcgcaacttcttgcaggcttccgaccaccgcag
caatcaaccccgcaacctgcctcaactcctaatccacccgctttgaatttggcggaacta
ctcaaacgcgtatcttccccagcacaatcgaactcagtacccgccccagctccgtttcaa
atgcccttccaaggcttcccgccaccagtctcgactccagtgccagcacctcaggctccc
ccaccgacccaatccgcgacgcccactgccaaccttgcggcattgcttgcacaattcagc
aaacctggtgcggcaccaccctcaatgccacccacgcccgtacaaagtaccccccttcct
caattaccacctcaacccccagctgctccccctgctctagggtcagccgaatggctccta
aaagctttaagtggtgtgcctggtggcatgcctgcgaactcaactccagttgcgtctcag
ccgaccacgcaacaggcaccagcgcctattagtttgacggaccagatcgagcttaccact
gcgtcgatgaagaaacctcgtctacatctcatatcacgcctctacgaagccaagcccaac
atctgcgccacatgtggccgtcgctttgagagcacacccgaaggcaaagagaaaaaggca
cgtcacatggactggcacttcaaggtcaaggatcctgatgctggtaagcgaggtgtacac
cgcagttggtatattcctgagaaggaatggatcgagtaccgtgaagtcgatgagacttct
ccgaaccactccaacgatgcttcttccggtaatggtgccgctaaaccaaagaagcaggcc
aaagatcggtatgtgagcgtaccacaagacgtcacactacagcaggcgccatgccccatt
tgtcaggacaagttcgagacgcagtggaacgtagaggccaatgactttgtatggatggat
gctgtgagtgtaggtggtaaaatataccatgctacttgttttgaggaggtatatggcaag
ggtgttggtatagagacaccaggcacaccggattcagttctcggaaagagaaaggctgac
attggcgccaatggcgacggaaagaaggttagggcctattga
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integrated database retrieval system
