Apteryx mantelli mantelli (North Island brown kiwi): 106482030
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Entry
106482030 CDS
T04298
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam03030
DNA replication
aam03410
Base excision repair
aam03420
Nucleotide excision repair
aam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106482030 (LIG1)
03410 Base excision repair
106482030 (LIG1)
03420 Nucleotide excision repair
106482030 (LIG1)
03430 Mismatch repair
106482030 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aam03032
]
106482030 (LIG1)
03400 DNA repair and recombination proteins [BR:
aam03400
]
106482030 (LIG1)
Enzymes [BR:
aam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106482030 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
106482030 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
106482030 (LIG1)
DNA replication proteins [BR:
aam03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
106482030 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
106482030 (LIG1)
DNA repair and recombination proteins [BR:
aam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
106482030 (LIG1)
NER (nucleotide excision repair)
Other NER factors
106482030 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
106482030 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
PGM1_C
Plasmodium_Vir
Motif
Other DBs
NCBI-GeneID:
106482030
NCBI-ProteinID:
XP_013794996
UniProt:
A0A8B7I824
LinkDB
All DBs
Position
Un
AA seq
857 aa
AA seq
DB search
VLEQGENPTQEPPSLGHEDCDGQDPSSPSSCLLAAASPDGSSPDSASSAEDSPSAPDGSS
TSLPGIPRRRTARKQVPKRKMELASCAENGHAVDPDPKRWREEPGDECESDSTEAQEVRD
QSSEEAKEAEDGNGDREAQTSELPKPSKAVADFFAPRKGSRMKAEENAAPKTPAPKGSAP
ASIDGTNGTASSPSQVAEPLDPAQYNPSKSSYHPIHDACWAPGQRVPYLAVARTFERIEE
VSARLKNIETLSNFLRSVIALSPSDLLACVYLCLNRLGPAYEGLELGIGESILMKAVAQA
TGRQLEKIKSEAQEKGDLGLVAESSRSNQRTMFAPPKLSAAGVLSKLQEMARMTGNASMN
KKIDIIKALFVACRHSEARYIARSLSGKLRIGLAEQSVLVALAHAVSLTPPAQGWPPAVV
DASQGKSAEARKAWLEERSQILKQTFCELPNYAAIIPVLLEHGLESLPLHCKITPGIPLK
PMLAQPTKGIGELLKRFEEAAFTCEYKYDGERAQIHILESGAVYVYSRNQENTTSKYPDI
VTRIPKVKKASVQSCILDAEAVAWDPEKKQIQPFQVLMTRKRKDVEAAEIKVQVCLYAFD
MLYLNGESLVKEPFSKRRLLLHESFVETEGEFLFATSMDACSTDEISEFLDQSIKDSCEG
LMVKTLDVDATYEIAKRSHKWLKLKKDYLEGVGDTLDLVVIGAYLGKGKRVGMYGGFLLA
CYDEESEEYQSICKIGTGFTEESLEKHYGFLKDHVLAQPRPYYRWDSGAAPDHWLAAVQV
WEVKCGDLSISPVYKAAVGLVDEEKGISLRFPRFLRVREDKKPEEATSSSQVAELYKKQQ
QIQNQQLAEKGEDEDFY
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
gtgctggagcagggcgagaaccccacgcaggagcccccatccctgggacatgaggactgt
gatgggcaggaccccagctccccgtcctcctgcctgctggctgctgcgtccccggatggc
tcttctcccgacagtgcttcctcagctgaagatagcccctcagcccctgatggctcctcc
acctccctccctggcatcccccggcgcaggacagctcgtaagcaggtccccaagcgcaaa
atggagctggcgagctgtgcggagaatggacatgctgtggaccccgatcccaagcggtgg
agggaagagccgggagatgaatgtgaatcagacagcacggaggcgcaggaggtgagggat
cagagctcagaggaggctaaggaggcagaagatggcaatggggacagggaagcccagacg
tcagagctgccaaagcccagcaaagctgttgctgacttctttgcccccaggaaggggtcg
aggatgaaggcagaggaaaatgctgccccgaagacaccagccccaaagggttcggctccc
gccagcattgatggcaccaacgggactgcaagcagtccctcccaggttgccgagcctctg
gatccagcccagtacaacccctctaagagcagctatcaccccattcatgacgcctgctgg
gctcccgggcagagggtcccctacctggctgtggctcgtacctttgagcgcattgaggaa
gtctctgcccgcctgaagaacattgagaccctgagcaacttcctccgctcagtcattgcc
ctgtcaccgtctgacctcctggcctgtgtctacctctgcctgaaccgcctgggccctgcc
tatgaggggctggagctgggcattggggaaagcatcctcatgaaggctgttgcgcaggcc
acaggccgccagctagaaaaaatcaagagcgaggcccaggagaagggagacctggggctg
gtggccgagagcagccgcagcaaccagcggaccatgttcgcgccacccaagctgagcgct
gccggggtcctcagcaagctgcaggagatggccaggatgacaggcaatgcttcaatgaac
aagaaaatcgatatcatcaaggcattgtttgtggcctgccgccactccgaggctcgctac
attgcccggtcgttgagcgggaagctgcgcatcgggctggcggagcagtcggtgctggtg
gctttggcccacgctgtctcactgactcctccagcacaagggtggcccccagctgtggtg
gatgccagccagggcaagtctgctgaagcacgtaaagcctggctggaagagcggagccag
atcctcaagcagactttttgtgagctgccgaattatgctgccatcattcccgtgctgctg
gagcatgggctggagagcctgcccctgcactgcaagatcaccccagggatccccctgaag
cccatgctggcccagcccaccaaaggcattggggagctcctgaaacgcttcgaggaggcg
gccttcacatgcgagtacaagtacgatggcgagcgagcccagatccacatcctggagagc
ggggccgtgtacgtctacagccgcaaccaggagaacaccacctccaagtaccccgacatc
gtcacccgcatccccaaggtgaagaaggccagtgtgcagtcgtgcatcctggatgcagag
gctgttgcgtgggacccggagaagaagcaaatccagccattccaggtgctgatgacacgg
aagaggaaggatgtggaagctgctgagatcaaagtgcaagtgtgcctgtatgcctttgac
atgctgtacctcaatggggagtcgctggtgaaggagcccttctccaaacgccgcctgctg
ctgcatgagtcctttgtggagacggagggtgaattcctctttgccacctccatggatgcc
tgcagcactgatgaaatctctgagttcttggaccagtccatcaaggactcctgcgagggc
ctcatggtgaagactctggacgtggatgccacctatgaaattgcaaagcgatcccacaag
tggctgaagttgaagaaggattacctggaaggagtgggggacacgctagacttggtggtc
atcggtgcctacctggggaagggcaagcgcgtgggcatgtacgggggcttcctgctggcc
tgctacgatgaggagagtgaagagtaccagagcatctgcaagatcgggaccggcttcaca
gaggagagcctggagaagcactacggcttcctcaaggaccacgtcctggcccagccacgg
ccctactaccgctgggacagtggggcagcgcctgaccactggctggcggctgtgcaggtt
tgggaggtgaagtgtggtgacctctccatctcccctgtctacaaggcagctgtgggcctg
gtggatgaggagaaaggcatctcgctgcgtttcccccggttcctgcgtgtacgagaggac
aagaagccagaagaggccaccagcagctcccaggtggctgagctgtacaagaagcagcag
cagatccagaaccagcagcttgccgagaaaggggaggacgaggacttttactaa
DBGET
integrated database retrieval system
