Arvicola amphibius (Eurasian water vole): 119811108
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Entry
119811108 CDS
T08327
Symbol
Upf1
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119811108 (Upf1)
03015 mRNA surveillance pathway
119811108 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119811108 (Upf1)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119811108 (Upf1)
5.6.2.5 RNA 5'-3' helicase
119811108 (Upf1)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119811108 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
119811108 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
119811108
NCBI-ProteinID:
XP_038180607
LinkDB
All DBs
Position
4:complement(104535745..104557296)
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AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPSGA
SASGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSDMRLMQGDEICLR
YKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQS
ALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR
PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC
AKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERE
LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ
LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV
TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA
KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN
EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEGPLNN
LRESLMQFSKPRXLVNTVNTGANWLATAMYDAREAIIPGSVYDRSSQGRPSNMYFQTLRT
RLHDQCGSSHVAAMNXPIPFNLVMPPMPPPGYFGQATGRLLGRGTPKSKTGRGGARRSAL
GLPGPSQTNLPNSQASQDVASQPFSQGALTQGYVSMSQPLQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttggacactgaggag
gccgagttgctcggcgccgacacccagggttccgagttcgagttcacggacttcaccctc
cccagccagacgcagacgccccccggaggccccggcggcgcgggaggcccgagtggagcg
agcgcaagcggcgcggccggccagctagacgcacaagttggaccagagggcatcttgcag
aatggggctgtggatgacagtgtggccaagaccagtcagctgctggctgagctcaacttt
gaagaagacgaagaagacacgtactacaccaaggacctcccagtccacgcctgcagttac
tgcggaatccatgatcctgcctgcgtggtttactgcaataccagcaagaagtggttctgc
aatggccgaggaaatacttctggcagccacattgtaaatcacctggtgagggcaaaatgc
aaggaggtgacgctgcacaaggatggacccctgggcgagacagtgctggaatgctacaat
tgcggctgccgcaacgtcttcctgctgggcttcatccctgcaaaggctgactcagtagtg
gtgctgctgtgtaggcagccctgtgccagccagagcagcctaaaggacatcaactgggac
agctcccagtggcagcccctgatccaggaccgatgcttcctgtcatggctggtcaagatt
ccctcagagcaggagcagttgcgggcacggcagatcactgcacagcagatcaacaagctg
gaggagctgtggaaggaaaacccttcagccaccctggaggacctggagaagcccggcgtg
gatgaggagccccagcacgtgctcctgcggtatgaggatgcttaccagtaccagaacatc
ttcgggcccctggtcaagctagaagctgactacgacaagaagctgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctgatatgcggctcatgcagggcgatgagatctgtctgcga
tacaaaggggacctagcacccctgtggaaggggattggccatgtcatcaaggtccctgat
aattacggtgatgagattgctattgagctccgcagcagtgtgggtgcgcctgtggaggtg
acccacaacttccaggtggattttgtgtggaagtcaacctcttttgataggatgcagagt
gcactgaagacctttgctgtggatgaaacctccgtgtcaggatacatctaccacaagctg
ctgggccacgaggtggaggatgtggtcatcaagtgccagctgccaaagcgcttcacagct
caggggctccctgacctcaaccactctcaggtgtatgctgtgaagaccgtgctgcagaga
ccactcagcctcatccagggcccgccaggcacagggaagacggtgacatccgccactatt
gtctaccaccttgctcggcagggcaatgggcctgtgctggtctgtgctccaagtaacatc
gctgtggaccagctcacagagaagatccaccagacaggactgaaggttgtacgcctctgt
gccaagagccgggaggccattgactccccagtgtccttcttggctctgcacaaccaaatc
aggaacatggacagcatgcctgagctgcagaagctgcagcagctgaaggacgagacaggc
gaactgtcgtccgcggacgagaagcggtaccgggcgctcaagcgcacagctgagagagag
ctgctcatgaacgcagatgtcatctgttgcacctgtgtgggtgctggtgacccaagactg
gccaagatgcaattccggtccatccttattgatgagagcacccaggccactgagcctgag
tgcatggtgcctgtggtccttggggccaagcagctgatcctcgtgggcgaccactgtcag
ctgggccctgtggtgatgtgcaaaaaggcagccaaggccggactgtcacagtcgctcttc
gagcgcctggtggtgctcggcatccggcccatccgcctgcaggtgcagtaccgcatgcac
cccgcactcagcgccttcccatccaacatcttctacgagggctcattgcagaatggtgtc
actgcagcggatcgtgtcaagaagggctttgacttccagtggccacagcctgacaagccc
atgttcttctacgtgacacagggccaggaggagattgccagctctggcacgtcctacctc
aacaggacggaggcagctaatgtggagaagataactacaaagctgctgaaggcaggtgcc
aagcctgaccagattggcatcatcacaccctacgagggccagcgctcctacctggtgcaa
tacatgcagttcagtggctccctgcacaccaagctctaccaggaagtggagattgccagt
gtggatgccttccagggccgggagaaggacttcatcatcctgtcctgtgtgcgtgccaac
gagcaccagggcattgggttcctgaacgacccccggcgtctcaatgtggccctcaccaga
gcgagatatggtgtgatcattgtgggtaacccaaaagcactgtcgaagcagccactgtgg
aaccacctgctgagctactacaaggagcagaaggcgctggtggaagggccactcaacaac
ctgcgtgagagcctcatgcagttcagcaagcctcgcnagctcgtcaacacagtcaacacg
ggggccaactggctggctacagccatgtatgatgcccgcgaggccatcatccctggatct
gtctatgaccgcagtagccagggccggccctcaaacatgtacttccagaccctacggacc
agattgcatgatcagtgcgggtccagccatgtggccgccatgaacnatcccattcccttc
aacctggtcatgcctcccatgccaccacctgggtactttggacaggccacgggccggctg
ctggggcggggcaccccaaaaagcaagactggccgtggaggcgccagaagaagcgctttg
gggcttccagggcccagccagaccaaccttcccaacagccaggccagccaggatgtggcc
tcacagcccttctcgcagggcgccctcacacagggctatgtgtccatgagccagccactc
cagatgagccagcctggcctttcccagccagagctgtcccaggacagctacctcggtgat
gagtttaagtcacagattgacgtggcactctcgcaagactccacttaccagggagagcgg
gcataccagcacggcggggtcaccgggctgtcccagtactag
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integrated database retrieval system
