Arvicola amphibius (Eurasian water vole): 119813283
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Entry
119813283 CDS
T08327
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
119813283 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119813283 (Lig4)
Enzymes [BR:
aamp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119813283 (Lig4)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
119813283 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
HTH_Tnp_Tc3_2_like
ATG17_like
Motif
Other DBs
NCBI-GeneID:
119813283
NCBI-ProteinID:
XP_038184438
LinkDB
All DBs
Position
4:157125442..157131731
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AA seq
911 aa
AA seq
DB search
MAASQSPQTVAAHVPFADLCSTLERIHKSKDRAEKIRHFKEFLDSWRKFHDALHKNKKDV
LDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDALKLLNYRTPSGART
DAGDFAMIAYFVLKPRCLQKGSLTIQQVNELLDLVASNNSGKRKDLVKKSLLQLISQSSA
LEQKWLIRMIIKDLKLGVSQQTILNVFHNDAVELHNVTTDLQKVCQQLHDPSTGLSDISI
SLFSAFKPMLAAVADVERVEKDMKQQSFYIETKLDGERMQMHKDGAVYRYFSRNGYNYTD
QFGASPEEGSLTPFIHDAFRTDVQECILDGEMMAYAPTTQTFMQKGVKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYEILSNTLTPIQGRIEIVQKKLAHTKNEVVDALNE
AIDNREEGIMVKHPLSIYKPDKRGEGWLKIKPEYVTGLMDELDLLIVGGYWGKGSRGGMM
SHFLCAVAEAPPHGERPSVFHSLCRVGSGYTMKELYDLGLKLAKYWKPFHKKSPPSSILC
GTEKPEVYIEPHHSVIVQIKAAEIVPSDMYKTGTTLRFPRIEKIRDDKEWHECMTLGDLE
ELRGRASGKLATKHLHVGDDDEPREKRRKPVSKMKKTIGIIEHLKAPNLSNVSKVSNVFE
DVEFCVMTGMEGHPKPDLENRIAELGGCIVQNPGPETYCVIAGRRGIRVRNIISSDEHDV
VKPEWLLECCKTRTCVPWQPRFMVHMCPSTKQHFAREYDCYGDSYFVDTDLEQLKEVFSG
IKPREQQTPEEVAPVIADLESRYSWDRSPLSMFRHCTVYLDLYAVVNDLSSKIEATRLGV
TALELRFHGARVASCLSEGVSHVIVGDDQSRVADFKAFRRTLKKKFKILQERWVTDSVDK
CELQDESRYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctcacagtctccacaaaccgttgcagctcatgtcccctttgcagacttatgt
tccacgttggaacggatacataaaagtaaagaccgtgcagagaaaatcaggcacttcaag
gaatttttagattcttggcggaaatttcacgatgcccttcataagaacaagaaggatgtt
ctagactccttttacccagccatgagacttattcttcctcagttagagagagagaggatg
gcgtatggtatcaaagaaaccatgcttgccaagctttacatcgaattactgaatttacca
agggaaggcaaggacgccctgaagctcctaaattatcgaacaccgagtggcgctcgcacg
gatgctggggactttgcgatgattgcgtacttcgtgttgaagccacggtgcttacagaaa
ggaagcttaaccatacagcaggtgaatgaactcttggacttagttgccagcaataattct
ggcaaaagaaaagacctagtaaaaaagagccttctccagttgatatctcagagttcagcc
ctggagcaaaagtggctgattcgcatgatcattaaagacttaaagcttggtgtcagtcag
caaacgatacttaacgtttttcataatgacgcagttgagttgcacaacgtcaccacagat
ctgcagaaggtctgccagcaactccatgacccctccacagggctcagcgatatctctatc
agtctcttttctgcctttaagccgatgctagccgccgttgccgatgtggagcgcgtggaa
aaggacatgaaacagcagagtttctacatcgagaccaagctggacggcgaacgcatgcag
atgcacaaagacggggcggtgtaccggtacttctccagaaacggctataactacaccgat
cagtttggagcatccccagaggaaggctccctcacccccttcatccacgacgccttccgg
acagacgtgcaagagtgcatccttgacggtgagatgatggcctacgccccgaccacgcag
acgttcatgcagaagggggtcaagttcgacatcaaaaggatggtggaggattccgacctg
cagacgtgttactgcgtcttcgacgtgttgatggttaataataagaagctagggcgtgag
accctgaggaagagatatgagatccttagcaatacgttgacacccatccagggtcgaata
gagattgtgcagaagaagctagctcacacgaagaacgaggtggtggatgccttaaatgaa
gccattgataacagagaggagggcatcatggtcaaacaccctctgtcaatttacaaacca
gacaagagaggtgaagggtggctgaaaattaagccggagtatgtcactggcttaatggac
gaattagacctcttaattgtggggggctactggggcaaaggttctcgaggcggcatgatg
tctcactttttgtgtgcggtggcagaagcgccgcctcacggtgagaggccatccgtgttc
cattctctatgtcgtgttgggtcaggatacaccatgaaggagctctatgatcttggcctg
aaattggccaaatattggaagcctttccataagaaatctccaccgagtagcattttatgc
ggcacagagaagccggaagtgtacatcgagcctcatcactccgtgattgtccagatcaag
gcggcagagatcgtccccagtgacatgtacaagactgggaccacgctgcgcttcccgcgc
atcgagaagatcagagatgacaaggagtggcatgagtgtatgaccctgggtgacttggaa
gagctgagggggagggcatctgggaagcttgccacaaagcaccttcatgtcggcgatgac
gacgaacctagagaaaagagacgaaaacccgtctccaaaatgaagaaaaccatcggaatt
atcgaacacttgaaagcgcctaacctctctaacgtaagcaaggtttctaacgtatttgag
gatgttgagttttgtgttatgactgggatggagggccatcccaagcctgacctggagaac
agaattgcagaacttggtggctgcatcgtgcagaatccaggcccagaaacgtactgtgtg
atcgcagggcgcaggggcatcagagtgaggaacattatctcctccgacgaacacgatgtc
gtgaagcccgagtggctgctggagtgttgtaaaacaagaacgtgtgtgccatggcagcct
cgcttcatggttcacatgtgcccgtcaacaaagcagcactttgcccgtgaatatgattgc
tatggagatagctattttgttgatacagatttggagcaactgaaagaagtgttctcagga
attaaacccagggagcagcagactcctgaagaagtggcccccgtgatcgccgacctagaa
tcccgctattcctgggatcgctctcctctcagtatgtttcgccactgcaccgtgtatctg
gacttgtatgctgttgtcaacgacttgagctccaaaatcgaagcaacgagattaggtgtg
acagcactcgagctgcggtttcatggagccagggtagcgtcctgcttatctgaaggggtg
tctcatgtgatcgttggggacgatcagagccgagttgcagacttcaaagctttcaggagg
actcttaagaaaaagtttaagatcctgcaagaacgttgggtgaccgattcagtagacaag
tgtgagctgcaggatgaaagtcggtatttgctctag
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