Arvicola amphibius (Eurasian water vole): 119816613
Help
Entry
119816613 CDS
T08327
Symbol
Ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119816613 (Ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119816613 (Ddx46)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119816613 (Ddx46)
Spliceosome [BR:
aamp03041
]
Complex A
U2 snRNP components
U2 related factors
119816613 (Ddx46)
Complex B
119816613 (Ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
FAM176
Motif
Other DBs
NCBI-GeneID:
119816613
NCBI-ProteinID:
XP_038189325
LinkDB
All DBs
Position
6:151849952..151895508
Genome browser
AA seq
1032 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRS
RSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGSKSKKAENRSRS
KEKAEGGDSSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEKWREEQRKKAME
NIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEGEELDPLDAYMEEVKEEVK
KFNMRSVKGGAGNEKKSGPTVTKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEE
VDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGI
TVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGS
GKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVY
GGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFE
PQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVI
EEEKKFLKLLELLGHYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDS
IINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAY
TFITEDQARYAGDIIKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKF
DETEQALANERKKLQKAALGLQDSDDEDAAVDIDEQIESMFNSKKRVKDMAAPGTSSVPA
PTAGNAEKLEIAKRLALRINAQKNLGIESQVDVMQQATNAILRGGTILAPTVSAKTIAEQ
LAEKINAKLNYVPLEKQEEERQEGGQSESFKRYEEELEINDFPQTARWKVTSKEALQRIS
EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIRLQNS
YQPTNKGRYKVL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggccgggagtctcgccactaccgcaaacgatcggcatcacgaggacggtctggaagt
cggtctcggagtcgctcaccctctgacaaaagaagtaaacgtggagatgacaggcgctct
aggagtagagatagagacagaaggagagagaggtctcgcagcagggacaaaagaagatca
cggtccagggacaggaagcgcctgaggcgctccagaagtagagagcgagacagaagccga
gagcgaagaagatctcggagccgagataggagacgctcaaggagtagaagccggggccgg
cgatcccggtcctccagtcctggcagcaaaagcaagaaggctgagaataggtctagatcg
aaagagaaagcagaaggtggggacagttctaaagagaagaaaaaggacaaagacgacaag
gaagatgagaaggagaaggatgctgggaactttgaccagaataagctggaggaagaaatg
agaaaacgaaaagaaagagttgaaaaatggcgagaagagcagcgtaaaaaggccatggaa
aacataggggaattgaagaaggaaatcgaggaaatgaaacaagggaaaaagtggagttta
gaagatgatgatgatgatgaagatgatcctgcggaagctgaaaaggaagggaatgaaatg
gagggcgaggagttagatccattagatgcctacatggaggaagtgaaagaagaagtgaag
aagtttaacatgcggagtgtgaaaggcggtgcgggcaatgagaagaagtctggaccaacc
gtcaccaaagtggttactgtggtaacaaccaaaaaagcagtagtggattctgataagaag
aagggagagctgatggagaatgaccaggatgctatggagtattcttcagaggaggaggaa
gttgatcttcagacagccttgacaggctaccagacaaaacagagaaaacttctagaacca
gttgatcatggaaaaattgagtatgaaccattcagaaaaaatttttatgttgaagttcca
gaactagcaaaaatgtctcaggaggaggtgaatgtgtttcgattggaaatggagggcatt
acagttaaaggaaaaggttgtccaaaaccaattaagtcctgggtccagtgtggaatttcc
atgaagatactaaactccctcaaaaagcatggctatgagaagcccacaccaatccaaact
caagcaattcctgctataatgtctggacgagatttaattggcattgccaagacaggaagt
ggaaaaaccattgcctttcttttgcccatgtttagacacatcatggatcaaagatctttg
gaagaaggagagggcccaatagctgtcatcatgactccaactcgagaactggctttacag
atcactaaagaatgtaagaagttttcgaagaccttgggactcagagtggtctgtgtgtac
ggagggacaggaatcagcgagcagatcgctgagctgaaaagaggtgctgagattattgtt
tgcacacctggtcggatgattgacatgttagcagctaacagtggtcgagtcacaaatctc
cgaagagtgacatatgttgttttagatgaagcagacagaatgtttgacatggggtttgaa
ccacaggtcatgcgcattgtggataatgttcgtcctgaccgacagacagttatgttttca
gctactttccctagagctatggaggctttggcccgcaggatcctgagcaagcccattgaa
gttcaggttgggggcaggagtgtggtttgctcagatgtggaacaacaagtgattgtgatt
gaagaagaaaagaaattcttgaaattactcgagcttttaggccattatcaggagtcggga
tctgtcattatatttgtggacaagcaggagcatgccgatggtctcctgaaggacttgatg
agagcatcttacccctgcatgtctcttcacggcggtattgatcaatacgacagggacagc
atcataaatgactttaagaatggaacctgcaaacttctcgtagccacgtcagttgctgct
cgaggtctagatgtgaaacatctgattcttgtagtaaattacagctgtcccaaccattat
gaagattatgtgcacagagctggacggactggaagggcaggcaacaaaggctatgcctac
actttcatcacagaagatcaagctcgctatgctggtgacataattaaagctcttgaattg
tcagggacggcagtgcctcctgacctggaaaagctctggagtgacttcaaagatcagcag
aaagcagaaggaaaaataattaaaaagagtagtggtttctctggcaagggattcaagttt
gatgaaacagaacaggcgttagccaacgagaggaagaagttacagaaagctgctcttggc
ctgcaagattcagatgatgaagatgctgcagtcgatattgatgaacagattgagagcatg
tttaattcaaagaagagagtaaaagacatggctgcacctggcacatctagtgtgcctgcc
ccaaccgcaggcaacgctgagaagctagagattgccaagaggctggctctcagaatcaac
gctcagaagaacctaggcatcgagtctcaggtagatgtgatgcagcaggccaccaatgcc
attctcagagggggcaccattctggctcccacggtgtcggcaaaaaccattgcagaacag
cttgctgaaaagatcaatgccaagctcaattacgtgcctttggagaaacaggaagaggag
aggcaggagggtgggcagagcgaatctttcaagagatatgaggaagagttagaaattaat
gacttcccacagacggcgaggtggaaagtcacctctaaggaagccctgcagagaatcagt
gagtactcggaagccgccatcacgatcagaggcacctacttccctcctggcaaagagccc
aaggaaggagagcggaaaatttacttggcgattgaaagtgccaatgagctggctgtgcag
aaagcaaaggcagaaatcaccaggctcataaaagaagaactgatccgactgcaaaattcg
taccaaccaacaaataaaggacgatacaaagtattataa
DBGET
integrated database retrieval system
