Arvicola amphibius (Eurasian water vole): 119820518
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Entry
119820518 CDS
T08327
Symbol
Lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03030
DNA replication
aamp03410
Base excision repair
aamp03420
Nucleotide excision repair
aamp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119820518 (Lig1)
03410 Base excision repair
119820518 (Lig1)
03420 Nucleotide excision repair
119820518 (Lig1)
03430 Mismatch repair
119820518 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aamp03032
]
119820518 (Lig1)
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119820518 (Lig1)
Enzymes [BR:
aamp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119820518 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
119820518 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
119820518 (Lig1)
DNA replication proteins [BR:
aamp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
119820518 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
119820518 (Lig1)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
119820518 (Lig1)
NER (nucleotide excision repair)
Other NER factors
119820518 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
119820518 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
119820518
NCBI-ProteinID:
XP_038194857
LinkDB
All DBs
Position
8:69722691..69757924
Genome browser
AA seq
934 aa
AA seq
DB search
MRKKEQERKGENSAATMQRSIMSFFQPTKEGKAKKPEKETANSIREKESPPKVALKERNR
VVPESDSPVKRPGRKVAQVLSSEGEEEDEAPGTPKVQKSVSDSKQNSSSSPDTCPENSPL
FNSPSMDISPSGFPKRRTARKQLPKRTIQDSVEEQNEDKDRAAKKRKKEEEAQTPTESLT
EAEDAKQKEEKEGSQPIVPPEPAKSPESVTLTKTENIPVCKAGVKQDPQEEEQSKPSARS
AKTLSSFFAPRKPAVKAEVKQEESGTPRKEETKGTLDPTNYNPSKSNYHPIEDACWKHGQ
KVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLYLSLSRLGPPQQGL
ELGVGDGVLFKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTTSGVF
TKFCDIARLTGSASMAKKVDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQ
AVSLTPPGQEFPPAVVDAGKGKTAEARKMWLEEQGMILKQTFCEVPDLDRIIPLLLEHGL
ERLPEHCRLSPGIPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVK
IFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKE
VDASEIQVQVCLYAFDLIFLNGESLTRQPLSRRRQLLRENFVETEGEFVFATSLDTKDIE
QIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAY
LGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSLKALVLPTPRPYVR
IDGAVAPDHWLDPSVVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVRGDKQPE
QATTSDQVAGLYRKQSQIQNQQSSDLDSDSEDCY
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagaaagaacaagagaggaaaggggagaactccgctgccaccatgcagagaagt
attatgtcatttttccaacccaccaaagagggtaaagcaaagaagcctgaaaaggagaca
gccaacagcatcagagagaaggagtcccctccaaaggtggcattgaaggagaggaatcga
gtggtgcctgagagtgattctccagtgaagaggccaggaaggaaggtggcccaggtccta
agcagtgaaggggaggaggaagatgaagctcctggcacccccaaagttcagaagtctgtg
tcagactccaaacagaactcttcttccagccctgacacatgtcctgagaatagtcctttg
ttcaacagcccctccatggatatttccccatcaggatttccgaagcgtcgcactgctcgg
aagcagctcccgaaacggacaattcaggactctgtggaagagcagaatgaggacaaagac
agagcagccaagaaaaggaagaaggaagaagaagcacagaccccaacagaaagtctcaca
gaggctgaagatgcaaaacagaaggaagaaaaggaggggagccagcccatagtgccccct
gagcctgcaaagtcccctgagtcagtaaccctgacaaagacagagaacattccagtgtgt
aaggctggtgtcaaacaggatcctcaggaagaggagcagagcaaaccttctgccagaagt
gccaagacactcagcagcttctttgctccccggaagccagcagtgaaagctgaagtgaaa
caagaagagtcaggtactccaaggaaggaagagaccaagggaaccctggatccaacaaat
tacaatccttccaagagtaactaccatcccattgaagatgcctgctggaaacatggccag
aaagttccttttcttgctgtggcccggacatttgagaagatagaggaggtttctgctcgc
ctcaagatggtggagacactgagcaacctgctacgctctgtggtggccctgtcaccccca
gacctgctccctgtcctttacctcagcctcagccgccttgggccacctcagcagggactg
gagctgggcgttggtgatggtgtcctcttcaaggccgttgcccaggccacaggtcgtcag
ctggagtccatccgggctgaggtagctgagaagggtgatgtgggactggtggctgaaaac
agccgcagcactcagagactcatgctgcccccacctccactcaccacctccggtgtcttt
accaaattctgtgacattgcccggctcactggcagtgcttccatggctaagaaggtggac
atcatcaagggcctttttgtcgcctgccgccactcagaagcccgattcattgccaggtcc
ttaagtggacggctgcgccttgggctggctgagcagtctgtcttggctgcacttgcccag
gctgtgagccttacaccccctggccaagaatttccccctgctgttgtggatgctgggaag
ggcaagacagcagaggccagaaagatgtggttggaagaacaaggcatgatcttgaagcag
accttctgtgaggtgcctgacctggatcgaatcatccctctgctattggaacatgggctg
gaacgtctcccagagcactgcaggctgagcccagggatccctcttaaaccaatgctggcc
catcctactcggggtgtcagcgaggtactgaagcgctttgaagaggtggacttcacctgc
gagtataaatacgatgggcagcgggcacagatccatgttctggaaggtggagaggtgaag
atcttcagcaggaaccaggaagacaacacaggaaagtaccctgacatcatcagccgcatc
cccaagattaaactcccctcagtcacttctttcatcctggacactgaggctgtggcctgg
gatcgggaaaagaagcagatccagccattccaagtgctcaccacacgaaagcgcaaggag
gtggatgcatcggagatacaggtgcaggtgtgtctgtatgcctttgatctcatcttcctc
aacggagagtccctgactcgccagcccttgtctcggcgccggcaactgctccgggagaac
ttcgtggagacagagggcgagtttgtcttcgccacctccctggacaccaaagatatcgag
cagattgctgagttcttggagcagtcagtgaaggactcctgtgaggggctgatggtgaag
accctggatgttgatgccacctatgagatcgccaagaggtcacacaattggctcaagctg
aagaaggactaccttgacggtgtgggtgacactctggatcttgtggtgattggtgcctac
ctgggtcgggggaagcgtgctggccggtatgggggcttcctgttggctgcctatgatgaa
gagagtgaagagctgcaggccatatgcaagctgggaactggattcagtgatgaagagctg
gaggagcatcaccagagcctgaaggccctggtattgccaaccccacgcccctatgtgaga
attgatggggcagtggctccagaccactggctggaccccagtgttgtgtgggaggtgaag
tgtgcagatctctctctgtcccccatctaccctgctgcacggggcctggtggacaaagaa
aaaggtatctcccttcgtttccctcggttcattcgtgtccgtggagacaagcagccagag
caagccactaccagtgaccaggtggccggtttataccggaagcagagtcagattcagaac
caacaaagctcagacttggactccgactctgaggactgctattaa
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