Arvicola amphibius (Eurasian water vole): 119826561
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Entry
119826561 CDS
T08327
Symbol
Col15a1
Name
(RefSeq) collagen alpha-1(XV) chain
KO
K08135
collagen type XV alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119826561 (Col15a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
aamp00535
]
119826561 (Col15a1)
Proteoglycans [BR:
aamp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
119826561 (Col15a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
119826561
NCBI-ProteinID:
XP_038203877
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Position
11:99499912..99605314
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AA seq
1376 aa
AA seq
DB search
MAPRRTVQDRRPRWLLPIISALLSVVLQTRATTGSASQDHLDLTELIGVPLPSSVSFVTG
YGGFPAYSFGPGANVGRPAMTLMPPTFFKDFAIGVAVKPSGAQGGVLFAITDASQSVIYL
GLRLSSVEDGHQRIILYYTEPGSHVSREAAAFSVPVMTNRWNRFAVTVQGEEVALLMDCE
EHSHVLFQRSSRPLTFEPRAGIFVGSAGAMGLETFTGSIQQLTIYMDPRTPEELCEAQES
SASGEASGLQEMDEVAEIMEAVTYTQAPPKEAHINPISIPPTSSSPAEDPELSGEPVPEG
TPETNLSVVKHSSPEQGSGEILNDTLEVQAVDGDPSTDGGSGDGALLNVTDGQVLSATAT
GEANVPVTTTLEAEVNSVPTGSPNLAITTQNSREMATSDPENEENLATAASGDGEVPTST
AGEAEAGSMPTAGPTLSMLIQKPREEATLGPNGEELLTPAVSKLPLGAFEEEEASGTAID
SLDNVPTPTVALEQASEIPTDIQNTPTSTVVLEQASRSPTEPQATFTPTVVPEQVFTPAP
PGGEDLVASTEDAEEEGSGSILPSGPLLPTPTVTPERQITPVGVETEGSGPVLDSDVGSG
SGDIVGSEDLLRGPPGPPGPPGSPGIPGKPGTDVFMGPPGSPGEDGATGEPGPPGPEGQP
GLDGASGKPGMKGEKGARGPNGSAGEKGDPGNRGLPGPPGKNGQVGTPGVMGPPGPPGPP
GPPGPGCTTELGFEDFEGSGNIQPLSKPRLTGPSSPIGPKGEKGEQGPKGERGMDGTSTV
GPPGPRGPPGRVEVLSSSLFNITNGSMNFSDIPELMGPPGPDGVPGLPGFPGPRGPKGDT
GVPGFPGLKGEQGEKGEPGAILTGDVPLEMVKGRKGEPGMHGAPGPMGPKGPPGHKGEFG
LPGRPGRPGLNGLKGAKGDRGIMMPGPPGLPGPPGPPGPPGAMVNIKGAVFPIPARPHCK
TPVGTAHPGDPELVTFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLHSL
KGGNGDAAFRGESSNNLFVSGPPGLPGHPGLIGQKGEAVVGPQGPPGIPGLPGPPGFGRP
GVPGPPGPPGPPGPPAILGSAVALPGPPGPPGQPGLPGSRNLVTALNDMGDMLQKAHLVI
EGTFIYLRDSAEFFIRVRNGWKRLQLGELIPIPADSPPPPALSSNPYQPQPPLNPILSAN
YQRPVLRLVALNTPVAGDIRADFQCFQQARAAGLLSTFRAFLSSHLQDLSTVVRKAERFS
LPIVNLKGQVLFNNWDSIFSGDGGQFNTHIPIYSFDGRDVMTDPSWPQKVIWHGSNPHGV
RLVDKYCEAWRTADMAITGFASPLSTGKILDQKAYSCANRLIVLCIENSFMTDARK
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggcacccaggaggaccgtgcaggaccggcgcccgcggtggctgctccccatcatctcc
gcactgctctccgtcgtcctgcagacgcgcgccacgacagggtcggcctcccaggaccat
ctggacctcacggagctcatcggtgttccattaccctcgtctgtgtcctttgtcaccggt
tatggtggtttcccggcttacagctttgggcctggtgccaatgtcggccgcccagccatg
acccttatgccacctaccttcttcaaggattttgccatcggtgtggcagtgaagcccagc
ggcgcccaaggaggcgtgctcttcgctattaccgatgcttcccagtcggtcatctacctg
ggcctgcggctgtccagtgtggaggacggccaccagcggattatcctgtactatacggaa
ccaggctcccatgtgtcccgtgaagccgctgccttttcagtgcccgtgatgaccaacagg
tggaatcgttttgctgtgaccgttcagggtgaggaagtcgcccttctcatggactgtgag
gagcatagccacgtccttttccagcgatcttcccggcctctgaccttcgagccccgtgct
gggatctttgtgggcagtgcgggagccatggggctggagacatttacgggctccatacag
caacttaccatctacatggaccccaggacccctgaggagctgtgtgaagcccaagagtcc
tcggcatctggagaagctagtggacttcaggagatggatgaagtcgctgagatcatggaa
gctgtcacctacactcaggccccgcctaaagaagcacacatcaatcccataagcatacct
cctacttcatcctctcctgctgaggacccggagctttctggtgaacctgttccagaggga
accccagaaaccaacttgagcgtcgtcaagcatagcagccctgagcaagggtctggtgag
attctgaatgacaccctggaggtccaggctgtggatggggaccccagtactgatggtggt
tcaggggatggggccctgctgaatgtcactgatggtcaggtgttatcagcaacagcaact
ggagaggccaacgtgcctgtcaccactaccctggaagcagaggttaacagtgtgcctact
gggagccccaacctggccataaccacccagaactccagggaaatggctacttcggatcca
gagaatgaggaaaatctagcaacagcagcatcaggggatggtgaagtgcctaccagcact
gctggggaggcagaggctggctccatgcctactgcaggaccaactctgtccatgcttatc
cagaaaccaagagaagaggccactctgggtccaaatggtgaagaattgttaaccccagct
gtgtccaagctgccactcggtgcttttgaggaagaggaagccagcgggactgccatcgac
agcctagataatgtccccacacccacagtggcccttgagcaagccagcgagatccctaca
gacatccagaatactcccacatccacagtggtccttgagcaagccagccggagtcctaca
gagccccaggccactttcacacccactgtggtccctgagcaagtgtttactcctgcacct
cctggtggagaagacttggtggcctccacagaggacgctgaagaggaggggtctggcagc
atactccccagtgggcctctgctccccacacccacagtgactcctgagaggcagatcact
ccggtaggagtagagaccgaaggttctggccctgttttggactcagatgtgggttcaggc
tctggagacattgtgggcagcgaggatctgttgagaggtcctccgggccccccaggccca
cctggatcacctgggattccaggaaaaccaggaacggatgttttcatgggaccccctggc
tctcctggagaggatggagctactggtgagccaggacctccgggacccgagggacagcct
ggacttgatggagcctctggcaagcctgggatgaaaggagagaagggagcaagaggacct
aatggctcggctggcgagaagggagaccctggcaaccgaggcttaccaggacccccaggg
aaaaacggacaagttggcactcctggggtcatgggaccaccggggcctcctggaccacct
ggacccccaggccctggatgtacaacagaacttggatttgaggattttgaaggctccggg
aacatccagccgctgagcaaacccagactcacgggaccctcttctccaattggtcccaaa
ggagaaaaaggagaacaaggacccaagggcgaacggggaatggacggaaccagcactgtg
ggccccccagggcccagagggccccccgggcgtgtcgaggtcctgtccagttctttgttc
aacatcactaatggatccatgaatttctcggacattcctgagcttatgggacctccgggg
ccggatggtgtgcctgggctacccggatttccaggccccagaggaccaaaaggtgacact
ggcgtgcctggattcccaggtctgaaaggagaacagggtgagaagggagagccgggcgct
atcctgacaggggacgtccctctggaaatggtgaaagggagaaagggtgaacctggaatg
catggagccccaggacccatgggacccaaaggaccaccaggacataaaggagaatttggc
ctcccgggacgacctggtcgcccaggactgaacggtctcaagggtgccaaaggagatcga
gggatcatgatgccgggtccacctggcctacctggacccccaggaccccccggaccccct
ggagctatggttaacatcaaaggtgctgttttcccaatacctgcccggccacactgcaaa
actccagttggtactgctcaccctggggacccagagcttgtcactttccatggtgttaaa
ggagagaaagggtcctggggtcttcctggttcgaaaggagaaaagggggaccaaggagcc
caaggaccaccaggccctccggttgatcccgcttacctgagacattttctccatagcttg
aagggggggaatggagatgcagccttcagaggagagtccagcaacaacctctttgtgtct
gggcctccaggcctaccaggacatccaggcctgattggacagaaaggagaggctgttgtg
gggccccagggccccccagggattccaggcctgcctgggccacctggctttgggagacct
ggagtccctggaccaccgggaccccctgggccaccaggacctcctgccatcctgggttca
gctgtggcccttccaggcccacctggccctccaggacagccaggactcccaggatccaga
aacttggtcacagcactcaacgacatgggtgacatgctgcagaaagcacacttggttata
gaggggacgttcatctacctgagggacagtgcagagtttttcattcgtgtccgaaatggt
tggaaaaggttacagttgggagaactgatccccattcctgctgacagccccccaccacca
gcactttccagcaatccgtaccagccacagcctccactgaaccccattttaagtgccaat
taccagaggcccgttctgcgcctggttgctctgaacactccagtggcgggggacatccgg
gccgacttccagtgcttccagcaggccagggccgcgggactactgtccaccttccgggct
ttcctgtcgtcccacctgcaggatctctccacagttgtgaggaaagcagagagattcagc
ctccccattgtgaacctcaagggccaggtgctttttaacaattgggactcgatcttctcg
ggtgatggaggccagttcaatacacacattccgatatactcctttgacggtcgagatgtg
atgaccgatccgtcatggccccagaaagtcatctggcatggatccaacccccatggtgtc
cgtcttgtggataagtactgtgaagcctggcgaaccgcagacatggccataacaggattt
gcctccccactgagcacagggaagattctggaccagaaagcctatagctgtgctaatcgg
ctaattgtcctgtgtatcgaaaacagtttcatgaccgacgctaggaagtaa
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