Arvicola amphibius (Eurasian water vole): 119827127
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Entry
119827127 CDS
T08327
Symbol
Npc1l1
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04975
Fat digestion and absorption
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
119827127 (Npc1l1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
aamp02000
]
119827127 (Npc1l1)
Transporters [BR:
aamp02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
119827127 (Npc1l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
ACR_tran
Folate_rec
Motif
Other DBs
NCBI-GeneID:
119827127
NCBI-ProteinID:
XP_038204494
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All DBs
Position
1:complement(70349597..70370567)
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AA seq
1327 aa
AA seq
DB search
MAAGLKGWLLWALLLNTAQGDPYTPIHQAGYCTFYEECGKNPELSGGLTSLSNVSCLSNT
PARHVTGEHLALLQRICPRLYNGPNTTFACCSPKQLLSLDSSMSITKALLTRCPACSDNF
VSIHCQNTCSPNQSLFINVTRVIVQEASQPPAVVAYETFYQRSFAEAAYESCSRVRIPAA
ASLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLVEPGQALAEGIQPLNAEI
APCNESQGADSAACSCQDCAASCPVIARPPALRPSFYMGKMPGWLALIIIFTAVFVLLTA
VLVRLRVASNRKKRETTSPQEAPNRPRKRRFSPHTVLGRFFQNWGTKVASWPLTVLALSF
VIVIALSVGMMYIELTTDPVELWSAPKSEARKEKAFHDEHFGPFFRTNQVFVTARNRSSY
QYDSLLLGPKNFSGILSLDLLLELLELQERLRHLQVWSPEAGRNISLEDICYAPLNPHNT
TLSDCCVNSLLQYFQNNRTLLLLTANQTLGGQTSLVDWKDHFLYCANAPLTFKDGTSLAL
SCIADYGAPVFPFLAVGGYQGTDYSEAEALIITFSLNNFPADDPRMAQARLWEEAFLKEM
QAFQSSTADKFQVAFSAERSLEDEINRTTMQDLPVFAISYIIVFLYISLALGSYSRWKRI
AVDSKATLGLGGVAIVLGAVIAAMGFYSYLRVPSSLVIIQVVPFLVLAVGADNIFIFVLE
YQRLPRMPGEQREAHIGRALGSVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTAGLAI
ILDFLLQMTAFVALLSLDSKRQEASRPDVLCCLSPRKLPPPEQNEGLLLRFFRKIYAPFL
LHRFTRPVVMLLFLALFGANLYFMCQISVGLDQELALPKDSYLIDYFLFLNRYFEVGPPV
YFVTTSGYNFSSEAGMNAICSSAGCDSFSLTQKIQYATEFPEESYLAIPASSWVDDFIDW
LTPSTCCRLYSFGPNKDEFCPSTDTSFNCLRNCMSFTLGPVRPTPEQFDKYLPWFLNDPP
NIRCPKGGLAAYRTSVNLSSDGQVIASQFMAYHKPLRNSEDFTEALRTSRLLAANITAEL
RKVPGTDPDFEVFPYTISNVFYEQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDARSGIL
NLLSIIMILVDTIGLMAVWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKATRLER
AKDATVSMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNIVITLMGLLHGLVFLPV
VLSYLGPDVNPDLVLEEKLATEAAIAPEPSSSKHPIPDTEYVNPGFEDSTPGASAADSSL
PKRGQKF
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atggcagctggcctgaagggatggctgctctgggccctactcctgaatacggcccagggg
gatccctacacacccattcatcaggctggctactgcaccttttatgaagagtgtgggaag
aatccagagctgtctggaggcctcacatcactgtccaatgtatcttgcctatctaatacc
ccggcccgccacgtcacaggggaacacctggccctcctccagcgcatctgtccccgtctg
tacaatggccccaataccacctttgcctgttgctcccccaagcagttgctgtcgttagac
agcagcatgtctatcaccaaggccctcctcacccgctgcccagcctgctctgacaatttt
gtgagcatacactgccaaaacacctgtagccctaaccagagcctctttatcaatgtcacc
cgtgtgattgtgcaggaggcttcacagcctccggctgtggtggcctatgaaaccttttac
cagcgcagctttgccgaagcggcttatgagtcctgtagtcgggtgcgcattcctgcagct
gcctcactggccgtgggcagcatgtgtggggtctatggctcggctctttgcaatgcccag
cgctggctcaacttccagggagacacagggaatggcctggctccgctggacatcaccttc
cacctcgtggagcctggccaggccctggcagaggggatacagcctctgaatgcggaaatc
gcaccatgcaatgagtcccagggtgcagactcggcagcctgttcctgtcaggactgtgca
gcatcttgtcccgtcattgctcggcctccggcgctgcgcccttccttctacatgggtaaa
atgccaggctggttggctctcatcattatcttcactgcggtctttgtgttgctcactgct
gttcttgtgcgtcttcgagtggcttccaacaggaaaaagcgtgagacaacaagcccccag
gaagcccccaaccgccctcgtaagcgcagattctcacctcacactgtccttggccggttt
ttccagaactggggcacaaaagtggcctcgtggccactcaccgtcttggcactgtccttc
gtgattgtgatagctttgtcagtaggcatgatgtatatagaactcaccacagaccccgtg
gaactgtggtcagcccccaaaagtgaagcccggaaagagaaggctttccacgacgagcat
ttcggccccttcttccgaaccaaccaggtttttgtgacagctcgaaacaggtccagctac
cagtatgactccctgctgctagggcccaagaacttcagcgggatcctgtccctggacctg
ctgctggagctgctggagctccaagagaggcttcgccacctgcaggtgtggtccccggag
gcggggcgcaacatctccctggaggacatctgctacgcccccctcaacccgcacaacacc
accctctcggactgctgtgtcaacagcctccttcagtacttccagaacaaccgcacgctc
ctgctgctcacggccaaccagacgcttggtggccagacttccctggtagactggaaggac
cacttcctctactgtgccaatgcccctctcacattcaaagacggcacatctctggccctg
agctgcatagctgactacggggctcctgtcttccccttccttgctgttggggggtatcaa
gggacggactactccgaggcagaggcgctgatcataaccttctctctcaataacttccct
gctgatgatccgcgcatggcccaggccaggctctgggaggaggcttttctgaaggaaatg
caagccttccagagcagcacggctgacaagttccaggtcgccttctcagccgagcgctct
ttggaggatgaaatcaaccgcaccaccatgcaggacttgcctgtcttcgccatcagttac
attatcgtcttcctgtacatctccctggccctgggcagctactccagatggaagcgaata
gcggtggattccaaggctactctgggcctaggcggggtggctattgtgctgggagcagtc
atagctgccatgggcttctactcctacctgcgtgtcccctcctctctggttatcatccaa
gtggtacctttcctggtgctggccgtgggagctgacaacatcttcatctttgttcttgag
taccagaggctgcctaggatgcctggggaacagcgagaggcccacattggccgtgccctg
ggcagtgtggcccccagcatgctgctgtgcagcctctctgaggccatctgcttcttccta
ggggccttaacccccatgccggctgtgcggacctttgccttgaccgctggcttagcgatt
atcctcgacttcctgctccagatgactgccttcgtggccctgctctccctggatagcaag
aggcaggaggcctctcgcccagacgtcttatgctgcctttcaccccggaaactacctcca
cctgaacaaaacgagggactcttactccgcttcttccgaaagatatatgctcccttcctg
ctgcacaggttcacccgccctgttgtgatgcttctgtttctggccctgtttggagcaaat
ctctacttcatgtgtcaaatcagcgtgggactggaccaggagctggctctgcctaaggac
tcctacctgatcgactacttcctctttttgaaccgatactttgaagtggggcctccagtg
tactttgtcaccacctcgggctacaacttctccagcgaggcaggcatgaatgccatttgc
tccagcgcaggctgtgacagcttctccctaacccagaagatccagtatgccactgaattc
cctgaagagtcttatctggcgatcccagcatcctcctgggtagatgacttcatcgactgg
ttgactccatccacctgctgccgcctttattcctttggtcccaataaggatgagttctgt
ccttcaaccgatacttccttcaactgtttaagaaactgcatgagcttcacgctgggcccc
gtgaggcccacaccagaacagtttgacaagtacctgccctggttcctgaacgacccaccc
aacatcagatgtcccaaagggggtctagcagcgtatagaacctccgtgaatttgagctca
gatggacaggttatagcctcccagttcatggcctaccacaagcccctcaggaactcagag
gatttcacagaagctctccggacgtcccggctgctagcagccaacatcacagctgaactg
cggaaagtgcccggcacagacccagactttgaggtcttcccctacacgatctccaacgtg
ttctatgagcagtacctgactgtcctccctgaggggatcttcacactggctctctgcttt
gtacccacctttgtcgtctgctacctcctgctgggtctggatgcacgctcaggcatcctc
aacctgctctccatcatcatgatcctcgtggacaccatcggtctcatggctgtgtggggt
atcagctacaacgctgtgtccctcatcaaccttgtcacggcagtgggcatgtctgtggag
tttgtgtctcacatcacccggtcctttgctgtcagcaccaaggctacccggctggagagg
gccaaggatgctaccgtctccatgggcagtgcggtgtttgctggagtggccatgactaac
ttcccaggcatcctcatcttgggctttgctcaggctcagcttatccagatcttcttcttc
cgcctcaacattgtaatcaccttgatgggcctgctgcacggcctggtcttcctgccagtt
gtcctcagctatctgggacccgatgttaacccggatctggtactggaggaaaaactagcc
acagaggcagcaatagccccagagccttctagctccaagcaccccatccccgacacagaa
tatgttaaccccggctttgaagactctacccctggagctagtgctgctgacagctctttg
cccaaaaggggccagaagttttaa
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