Anguilla anguilla (European eel): 118225050
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Entry
118225050 CDS
T07545
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aang
Anguilla anguilla (European eel)
Pathway
aang03013
Nucleocytoplasmic transport
aang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aang00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118225050
03015 mRNA surveillance pathway
118225050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aang03019
]
118225050
Enzymes [BR:
aang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118225050
5.6.2.5 RNA 5'-3' helicase
118225050
Messenger RNA biogenesis [BR:
aang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118225050
mRNA cycle factors
Common to processing body (P body) and stress granule
118225050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118225050
NCBI-ProteinID:
XP_035268948
LinkDB
All DBs
Position
4:complement(22521663..22537062)
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGGVDDGVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDKDYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSV
SGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTG
KTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVS
FLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTC
VGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAK
AGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDF
QWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYE
GQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPR
RLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPR
KLVNTINPGARFMSTAMYDAREALIPGSVYDRSNTGRPSNMYFQTHDQIGMIGAGPSHVA
AMNIPIPFNLVMPPMPPPGYLGQANGPAAGRGALKGKAGRGGRQRNRGMGNHGGGQAHMP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcacagactctaaccttcctggacaccgaggaa
gcggagttgcttggagccgatacccagggttcggagttcgagttcaccgacttcactttg
cccagccagacgcaaacgcaaggccaaacccagagtcagctggacaaccaggtgaacggg
cctgatggagttttgcagaacggaggggtcgatgacggtgttgcgaaaaccagccagctc
ttggctgaactgaattttgaggaagatgaagaggacacctattacaccaaagacctcccg
gtgcatgcttgcagctactgtggcatccatgatcctgcttgtgttgtctattgtaacacc
agtaagaagtggttctgcaatggacgtggcaacacctctggcagccacattgtgaaccac
ttggtgcgagccaagtgcaaagaagtgactctccacaaagacgggcctctgggggagacc
gtgctggagtgctacaactgcggctgtcgcaacgtcttccttctgggcttcatcccagct
aaggcagattctgtggtggtgcttctctgcaggcagccatgtgccagccagagcagcctg
aaggacatcaactgggacagctcccagtggcagcctctgatccaggaccgctgcttcctg
tcctggctggtgaagatcccctccgagcaggagcagctgagggcccgccagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggaaaaccccacggccaccctggaggac
ctggagaagcctggcgtcgatgaggagccccagcatgtgctgctacgctatgaggatgcc
taccagtaccagaacatctttgggcctctggttaagctagaggctgactatgacaaaaag
ctaaaagagtcccagacccaagataatataacggtcaggtgggaccttgggctgaataaa
aagcggattgcttatttcacacttcccaagacggattcaggtgacatgcgcctgatgcag
ggagatgaaatctgcctgaggtacaagggagacctggccccgctctggaaggggattggc
cacgtcatcaaggttcctgataaagactacggggatgagatcgcgatcgagctgaggagc
agcgtcggggctcctgtggaggtgccgcacaacttccaggtggatttcgtctggaaatcc
acctccttcgaccggatgcagagtgctctgaagacctttgctgtggacgagacgtccgtg
tcggggtacatctaccacaagctcctggggcatgaggttgaggacgtcatcatcaaatgt
cagctgccaaaacgtttcactgcacaagggctgcctgacctcaaccactcccaggtgtat
gctgtgaagactgtgctgcagcgacccctcagtcttatccagggcccccctgggaccggt
aagactgtcacctcggcaaccattgtgtaccacctggccaggcaaggcaatgggcctgtg
ctggtgtgtgctcccagcaacatcgccgtggaccagctgactgagaagatccaccagacc
ggactgaaggtggtgaggctctgcgccaaaagccgggaggccatcgactcccccgtgtcc
ttcctggctttgcacaaccagatccgcaacatggacagcatgccggagctccagaagctg
cagcagctgaaggatgagaccggggagctgtcctccgcggacgagaagcgctaccgagcg
ctgaagcgcacggccgagagggagctgctcatgaacgcggacgtgatctgctgcacctgt
gtgggggctggggacccccgtttggccaagatgcagttccgctccatcctgattgatgag
agcacccaagctactgagccggagtgcatggtgcccgttgtgctgggggcaaagcagctc
atccttgtgggagaccactgtcagctgggcccagtggtcatgtgtaagaaggcagcgaaa
gcgggcctgtcccagtccctgtttgagcggctggtggtcctgggcatccgaccaatccgc
ttgcaggtgcagtaccgcatgcaccccgctctcagcgccttcccttccaacatcttctac
gaaggctccctgcagaacggagtcactgccgcggaccgcatcaagaagggcttcgacttc
cagtggccgcagccagacaagcccatgttcttctacgtgacccaaggacaggaagaaatc
gcgagctcagggacttcctatctgaacagaactgaggctgctaacgtggagaagatcacc
accaagctgctgaaggccggggccaagccggaccagattgggatcatcaccccgtatgag
ggccagcgttcctacctggtgcagtacatgcagttcagtgggtccctgcacaccaaactt
taccaggaagttgaaattgctagcgttgatgccttccaaggcagagagaaggatttcatc
atcctgtcgtgtgtccgagccaacgaacatcagggcattggatttctcaatgatccacgt
cgtctaaacgtggctcttacaagggcaaggtatggggtgatcattgtggggaaccctaag
gccctgtccaagcagccgctctggaaccacctgctaaactactacaaagagcagaaggtt
ctggtggagggtcctctcaacaacctgcgcgagagcctcatgcagttcagcaagcctcgc
aagctggtcaacaccatcaaccctggggcgcggtttatgagcacagccatgtacgatgct
cgtgaggctctaatccccgggtctgtgtacgaccgcagcaacacagggcgtccatcaaac
atgtactttcagacccatgaccagattggcatgattggggctggccccagccacgtggct
gccatgaacatccctattcccttcaacctggtcatgccccccatgcccccaccaggatac
ctgggccaggccaacggtcctgcagcaggccgcggtgctctgaagggcaaggccggccgc
ggcgggaggcagaggaaccgcggcatgggtaaccatggcggtgggcaggcccacatgccc
aacagccaggccagccaggacgtggtctcccagcccttctcccaggggcccctcacccag
ggctacatctccatgagccagccctctcagatgagccagcccggtctgtcccagcctgaa
ctgtctcaagacagctacctgggtgacgagttcaagtcccagattgatgtggccctgtcc
caggactcgacgtaccagggcgaacgtgcataccaacatggtggggtgactggactgtca
cagtactag
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integrated database retrieval system
