Anguilla anguilla (European eel): 118228849
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Entry
118228849 CDS
T07545
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aang
Anguilla anguilla (European eel)
Pathway
aang03013
Nucleocytoplasmic transport
aang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aang00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118228849
03015 mRNA surveillance pathway
118228849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aang03019
]
118228849
Enzymes [BR:
aang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118228849
5.6.2.5 RNA 5'-3' helicase
118228849
Messenger RNA biogenesis [BR:
aang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118228849
mRNA cycle factors
Common to processing body (P body) and stress granule
118228849
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
118228849
NCBI-ProteinID:
XP_035276248
LinkDB
All DBs
Position
6:2178908..2199754
Genome browser
AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGHTQSQLDNQVIV
TDGLLQNGGLDDAISKSSQLLAELNFEEDEEDTYYTKALPVHACSYCGIQDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVALHKDGPLGETVLECYNCGCRNAFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDSLPQRRASDYGDEIAIELRSSMGAPVEVPHNFQVDFVWKSTSFDRMQSALKTF
AVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLI
QGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSRE
AIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRAAERELLMNA
DVICGTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV
MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADR
IRKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQI
GIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGI
GFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQRVLVEGPLNNLRESL
MQFSKPRKLVNAMNPGARFMSTAMYDAREALIPGSVYDRSTTARPANMYFQTHDQMGMIG
AGPNPLAGLNFPIPFNLVMPPMPPPSHLGMSNGPAAGRGIMKGKVGRGGRQRSRGMGNHG
NSQGSQDMASQSGPLTQGFISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQDS
TYQGERAYQHGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccaagctcgcagactctcaccttcctggacaccgaggaa
gcggagctgctcggagctgatacccagggatcggagtacgagtttaccgacttcactctg
cccagccagacccaaacccagggccatacgcagagtcagctggacaaccaggttatcgtt
actgacgggcttctgcagaacggcggtcttgacgatgcgatctccaagagcagccagctc
ctggccgagctcaacttcgaggaggatgaggaggacacgtattacaccaaggctctcccc
gtgcacgcctgcagctactgtggaatccaggaccctgcgtgtgtggtctactgtaacacc
agtaagaagtggttctgcaacggtcggggaaacacctctggcagccacattgtgaaccac
ctggtcagggccaagtgtaaggaggtggcgctgcacaaggacgggccgctgggcgagact
gtgctggagtgctacaactgcggctgccgcaacgccttcctgctgggcttcatccccgcc
aaggccgactccgtggtggtgctgctctgcaggcagccgtgtgccagtcagagcagtctg
aaggacattaactgggacagctcgcagtggcagccgctgatccaggaccgctgcttcctg
tcctggctggtgaagatcccgtctgagcaggagcagctgagggcccgccagatcaccgcc
caacagatcaacaagctggaggagctctggaaggagaaccccggcgccacgctggaggac
ctggagaagccgggcgtggacgaggagccgcagcacgtgctgctacgctacgaggacgcc
taccagtaccagaacatcttcggcccgctcgtcaagctggaggccgactacgacaagaag
ctcaaggagtcccagacccaggacaatataactgtccgctgggacctgggtctgaataaa
aaaaggatcgcttatttcacacttcccaagacggactcaggtgacatgcggctgatgcag
ggggatgagatctgtctgaggtacaaaggagacctggctcctctgtggaagggcatcggc
cacgtcatcaaagttccagatagtcttcctcagcggcgcgcctcagactacggggatgag
atcgccatcgagctgcggagcagcatgggcgcccccgtggaggtcccccacaacttccag
gtggatttcgtgtggaagtccacctccttcgacaggatgcagagtgcactgaagaccttt
gctgtggatgagacctcagtctctgggtacatctaccacaagctgctggggcacgaggtg
gaggacgtggtgatcaagtgccaactgcccaaacgcttcactgcccacggcctgcccgac
ctcaaccactcccaggtgtacgctgtgaagacggtgctgcagagacccctcagtctcatc
cagggaccccctggaacagggaagaccgtcacctcggcaaccatcgtataccaccttgcc
cggcagggaaacggccccgtgctggtttgcgctcccagtaacatcgcagtggaccagctg
actgagaagatccaccagacgggcctgaaggtggtgcgtctctgcgccaagagccgggag
gccatcgactcgcccgtctccttcctggccctgcacaaccagatccgcaacatggacagc
atgccggagctgcagaagctgcagcagctgaaggacgagacgggcgagctgtcgtctgcc
gacgagaagcggtaccgagcgctgaagcgcgccgccgagcgggagcttctcatgaacgcg
gacgtgatctgcgggacgtgtgtgggcgcgggggacccccgcctggccaagatgcagttc
cgctccatcctgatcgacgagagcacgcaggccaccgagcccgagtgcatggtgcccgtc
gtcctgggagccaaacagctcatcctggtgggggatcactgccagctgggcccggtggtc
atgtgtaagaaggcggccaaggcgggcctgtcccagtccctgttcgagcggctggtggtt
ctgggcatccggcccatccgtctgcaggtccagtaccgcatgcaccccgccctcagcgcc
ttcccctccaacatcttctacgagggctccctgcagaacggggtgaccgccgccgaccgc
atcaggaagggctttgacttccagtggccgcagccggacaagcccatgttcttctacgtg
actcagggccaggaggagatcgccagctccggaacgtcctatttgaacaggacggaggcg
gcgaacgtggagaagatcaccacgcggctgctgaaggccggagcgaagcccgaccagatc
ggcatcatcacgccgtacgagggccagcgctcctacctggtgcagtacatgcagttcagc
ggctccctgcacaccaaactctaccaggaagtggagattgccagtgtggatgcattccag
ggcagagagaaagatttcatcatcctgtcctgtgtcagagccaacgagcaccagggcatc
ggcttcctcaatgacccgcgccgcctgaacgtggctctcacccgagccaggtacggggtg
atcattgtggggaaccccaaggccctgtccaagcagccgctctggaaccacctgctgaac
tactacaaggagcagagggtcctggtggaggggccgctcaacaacctgcgtgagagcctc
atgcagttcagcaagccgcgcaagctggtcaacgccatgaaccccggcgcacgcttcatg
agcactgccatgtatgacgccagagaggccctgatccccggctctgtatatgaccgcagc
accacagcgcgcccggcgaacatgtacttccagacgcacgaccagatgggcatgatcggg
gcggggcccaacccgctggccggcctgaacttccccatccccttcaacctggtgatgccc
cccatgcccccgcccagccacctgggcatgagcaacggccctgccgcagggcgtggcatc
atgaaggggaaggtggggcgtggcgggcggcagcggagccgtggcatgggtaaccacggt
aacagccagggcagccaggacatggcgtcccagtcgggccccctcacccagggcttcatc
tccatgagccagccgtcccagatgagccagcccggcctctctcagcccgagctgtcgcag
gacagctatctgggcgacgagttcaagtcccaaatggatgtggctttgtcccaggactcc
acttaccagggcgagcgtgcgtaccaacacggagtgacgggactgtcacagtactaa
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