Comamonas antarctica: HUK68_13150
Help
Entry
HUK68_13150 CDS
T07217
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aant
Comamonas antarctica
Pathway
aant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUK68_13150 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aant03019
]
HUK68_13150 (rnr)
03016 Transfer RNA biogenesis [BR:
aant03016
]
HUK68_13150 (rnr)
Enzymes [BR:
aant01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HUK68_13150 (rnr)
Messenger RNA biogenesis [BR:
aant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUK68_13150 (rnr)
Transfer RNA biogenesis [BR:
aant03016
]
Prokaryotic type
tRNA degradation factors
HUK68_13150 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QKV53763
UniProt:
A0A6N1X639
LinkDB
All DBs
Position
complement(2849582..2851915)
Genome browser
AA seq
777 aa
AA seq
DB search
MNLSTNSASATEEIEGSVQGHRDGHGFVLRDDGEKDIFIPANEMRAVLHKDRVKVHVVRY
DRRGRPEGRVTEIIERPTKTIIGRLLQESGVWLVAPEDKRYGQDVLIPANATGTAKTGQV
VVAELTESPALFGQPVGRIIEVLGEVDDAGMEIEIAVRKYDVPHEFSPECLEQAKALPDK
VRAIDRKQRIDLTDVPLVTIDGEDARDFDDAVYCEPAKIGRSKGWRLLVAIADVSHYVRT
GSAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVDRLCMVCDMLVTAKGEIHAY
QFYPAVMHSHARFTYTEVAAILSNTRGPEAQRRSARVPDLLNLHGVYQSLLKARQARGAV
DFETTETQIVCDDNGRIEKIIPRTRNEAHKLIEEAMLAANVCSADFIAQSGQNGLFRVHD
SPSLEKQEVLRNYLKAMAVGMSISDNPKPAEFQAIAQATKERPDAPQIHTMLLRSMMQAI
YTPVNEGHFGLAFDAYTHFTSPIRRYPDLLVHRVIKSELEGKRYRLPALPTPGEAHAKLA
KRLASRVSALGQAPRKKPAGGAELQAWEAAGLHCSANERRADEASRDVESWLKCKYMREH
LGEEFSGTVTAVTTFGIFVTLDAMYVEGLVHITELGGDYFKFDEMRQELRGERSGIRYAI
GSRLRVQVSRVDLDGRRIDFRLVQEGGEALPARSGGKREARGQRGRRDEFAGQRQERDAR
DNPESGAEMPTGRKPRGGRSLPSLPPPSPIEGLKASVRKAASGPKPPSGKPKRKPRR
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcagcacaaactctgccagcgcaaccgaagaaatcgaaggcagcgtgcagggg
catcgggacggccatggtttcgtgttgcgcgatgacggcgaaaaggacatcttcatcccg
gccaatgaaatgcgtgccgtgctgcacaaggaccgggtcaaggtgcatgtggtgcgctac
gaccggcgcggccggcccgaaggccgcgtcaccgagatcatcgagcgcccgaccaagacc
atcatcggccgcctgctgcaggaaagcggcgtctggctggtggcgcccgaggacaagcgc
tacggccaggatgtgctgattccggccaatgccaccggcacggccaagaccggccaggtc
gtggtcgcggaactcaccgaatcgccggcgctgttcggccagccggtcggacgcatcatc
gaggtgctgggcgaagtcgacgacgccggcatggaaatcgagatcgcggtgcgcaagtac
gacgtgccgcacgagttctcgcccgaatgcctggagcaggccaaggcgctgcccgacaag
gtgcgcgcgatcgaccgcaagcagcgcatcgacctgaccgacgtgccgctggtgaccatc
gacggcgaagacgcacgcgatttcgacgacgcggtctattgcgaacccgccaagatcggc
cgcagcaagggctggcgcctgctggtggccattgccgacgtgagccattacgtgcgcacc
ggcagcgccatcgacatcgatgcctacgaccgcgcgaccagcgtgtatttcccgcgccgc
gtgattcccatgctgcccgaaaagctcagcaacggcctgtgctcgctgaatcccgaggtc
gaccggctgtgcatggtctgcgacatgctggtcaccgccaagggtgaaatccacgcctac
cagttctacccggccgtcatgcacagccatgcgcgcttcacctataccgaggtcgcggcc
atcctgtcgaacacgcgcggccccgaggcccagcgccgcagtgcgcgcgttcccgacctg
ctgaacctgcacggcgtctaccagtcgctgctcaaggcgcgccaggcgcgcggcgcagtg
gacttcgagaccaccgagacgcagatcgtctgcgacgacaacggccgcatcgagaagatc
atcccgcgcacgcgcaacgaggcgcacaagctgatcgaagaggccatgctcgcggccaac
gtctgcagcgccgatttcatcgcgcaaagcggccagaacggcctgttccgcgtgcatgac
agcccctcgctggaaaagcaggaggtgctgcgcaactacctcaaggccatggccgtgggc
atgtcgatcagcgacaaccccaagcccgccgagttccaggcgattgcccaggccaccaag
gagcgtcccgacgcgccgcagatccacaccatgctgctgcgctcgatgatgcaggccatc
tacacgccggtgaacgaggggcacttcggcctggcgttcgatgcctacacccacttcacg
agcccgatccggcgctaccccgacctgctggtgcaccgcgtgatcaagtccgagctcgaa
ggcaagcgctaccgcctgccggcgctgcccacgccgggcgaggcgcacgccaagctggcc
aagcgcctggcaagccgcgtgagcgcactgggccaggcgccgcgcaagaagcccgcgggc
ggtgccgagctgcaggcctgggaggccgccggcctgcattgcagcgccaacgaacgccgc
gccgacgaggccagccgcgatgtcgagtcctggctcaagtgcaagtacatgcgcgagcac
ctgggcgaggagttctcgggcaccgtcacggccgtgaccaccttcggcatcttcgtcacg
ctcgatgcgatgtatgtcgaaggcctggtgcacatcaccgagctgggcggagactatttc
aagttcgacgaaatgcgccaggaactgcgtggcgagcgctcgggcatccgctatgccatc
ggctcgcgcctgcgtgtgcaggtcagccgtgtcgatctcgacggccggcgcatcgatttc
cggctggtgcaggagggcggcgaggcgctgcccgcgcgcagcggcggcaagcgcgaggcc
cggggccagcgcggccggcgcgacgagttcgcgggccagcgccaggagcgcgatgcacgc
gacaacccggagtcgggcgccgaaatgcccacggggcgcaagccgcgtggcgggcgttcg
ctgccgtcgctgccgccgccgtcgcccatcgaaggcctgaaggcctccgtgcgcaaggcc
gccagcggacccaagccgcccagcggcaaacccaagcgcaagccgcggcgctga
DBGET
integrated database retrieval system
