KEGG   Comamonas antarctica: HUK68_20425
Entry
HUK68_20425       CDS       T07217                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aant  Comamonas antarctica
Pathway
aant03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aant00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HUK68_20425 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aant03400]
    HUK68_20425 (ligD)
Enzymes [BR:aant01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HUK68_20425 (ligD)
DNA repair and recombination proteins [BR:aant03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HUK68_20425 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QKV55301
UniProt: A0A6N1X7F5
LinkDB
Position
unnamed1:225961..228543
AA seq 860 aa
MARKPGSARAAAAATAPAAAPAVAPLARYNAKRDFAKTAEPAGTLAPGGERLQFVIQKHW
ASHLHYDFRLELDGVMLSWAVPKGPSFDPAVKSLALQVEDHPVSYNRFEGEIPKGQYGGG
TVIIWDRGHWSPQGDARAGLAKGKLVFSLDGEKLAGLWELVRIAKPGDKRQNQWLLFKKR
DAWARPRSEYDVLTALPDSVVQKPLGQAAQRAGRAASEAPPEAGARRAALPATLAPQLAT
LVDSVPDGHWIVESKFDGYRVLVRIEGDDIRIFTRNGNDWTDKLKPLAEAVAALGVNCAW
LDGEIVVLDDAGVPNVHRLQNAIDHRTRNKDIVLFAFDLPFLGDSDLRALPLQARRGLLQ
QLLEGRESARLRFSPALEAPPGELLSAACKLGLEGVMVKQADAPYVSGRTETWLKLKCQL
RQEFAVIGFTLRSGATRQIGSLLLGYHEDGELRAAGAVGTGWDSATSRALHALLAPLEIK
RSPAVAAKAGSGRWARRKAGSEHWVKPEVVVEVAFGDWTPDQQIRHAVFRGVRTDKPAAE
IVREHAKQPASAAPAPKPARKAAAPASKADPGLMKVTNAQRVIDPSTGLRKIDLVRYYES
VAEWILPHLQQRPVSLVRAPEGITGELFFQKHAERSIAGVTELDAALWPEHAPLLAVNTP
QALLGAAQMNVIEFHTWNSRVKSIERPDRIIFDLDPGEGVTWPALLEAAELMRVMLVELG
LQSWPKTSGGKGLHVVVPITPRRDYAQIKAFAQAVAQHMARVIPAKFVAVMGPKHRVGKI
FIDYLRNGQGQTAVAAFSARARPGMGVSMPVAWEQLPELSGGAHWTVATARDYLSLRKDD
PWSDYWGTKQTITQGLRMLK
NT seq 2583 nt   +upstreamnt  +downstreamnt
atggcccgcaagcctgggtccgcccgtgcggcagcagcggccacggcgccggccgcggcg
ccggccgtagcgccgctggcgcgctacaacgccaagcgcgatttcgccaagaccgccgaa
cccgcaggcacgctcgcgccaggcggcgagcggctgcagttcgtcatccagaaacactgg
gcgtcgcacctgcattacgacttccggctcgaactcgacggcgtcatgctcagctgggcc
gtgcccaaggggccctcgttcgatccggcggtgaagtcgctggccctgcaggtcgaggac
catcccgtgagctacaaccgcttcgagggcgagattcccaaggggcagtatggcggcggc
acggtgatcatctgggaccgcggccactggagcccgcagggcgatgcgcgcgccggcctg
gccaagggcaaactggtgttctcgctcgacggggaaaagctggccggtctctgggaactg
gtgcgcatcgccaagcccggcgacaagcggcagaaccagtggctgctgttcaagaagcgc
gacgcctgggcgcggccgcgcagcgaatacgacgtgctcacggcgctgcccgacagcgtg
gtgcaaaagccgctgggccaggccgcgcagcgcgcgggccgggcagcgtccgaggcgccg
cccgaagccggcgcgcgccgggccgcattgccggcgacgctggcgccgcaactcgcgacg
ctggtcgacagcgtgcccgatggccactggatcgtcgaaagcaagttcgacggctaccgc
gtgctggtgcgcatcgagggcgacgacatccgcatcttcacgcgcaatggcaacgactgg
acggacaagctcaagccgctggccgaagccgttgccgcgctgggcgtgaactgcgcctgg
ctcgacggcgagatcgtcgtgctcgatgacgccggcgtgcccaacgtgcaccggctgcaa
aacgccatcgaccaccgcacgcgcaacaaggacatcgtgctgtttgccttcgacctgccg
ttcctcggcgacagcgacctgcgcgccctgccgctgcaggcgcggcgcggcctgctgcag
caactgctcgaaggccgcgaaagcgcgcgcctgcgtttcagcccggcgctcgaggccccg
cccggcgagctgctgagcgcggcctgcaagctgggcctcgaaggcgtcatggtcaagcag
gccgatgcgccctatgtctcgggccgcaccgaaacctggctcaagctcaagtgccagctg
cgccaggagtttgccgtcatcggcttcacgctgcgcagcggcgcgacgcgccagatcggc
agcctgctgctgggctatcacgaagatggcgaactgcgcgccgcgggcgccgtcggcacg
ggctgggattcagccacttcacgcgcgctgcatgcgctgctcgcgccactggagatcaag
cgctcgcccgccgtggccgccaaggccggctcgggccgctgggccaggcgcaaggccggc
agcgagcattgggtcaagcccgaggtcgtggtcgaggtggcgttcggcgactggaccccg
gaccagcagatccgccatgcggtctttcgcggtgtgcgcaccgacaagccggccgcagag
atcgtgcgcgaacatgccaagcagccggcgtcggccgcgccggcgcccaagccggcgcgc
aaggccgcggcgcccgcatccaaggccgatcccggcctgatgaaggtcaccaacgcccag
cgcgtcatcgatccgtcgacgggcctgcgcaagatcgacctggtgcgctactacgaaagc
gtggccgaatggatactgccgcacctgcagcagcggccggtgtcgctggtgcgcgcgccc
gagggcatcaccggcgagctgttcttccagaagcatgccgagcgcagcattgccggtgtc
accgaactcgacgcggcgctgtggcccgagcatgcgccgctgctggccgtcaacacgccg
caggcgctgctgggcgcggcgcagatgaacgtcatcgagttccacacctggaactccagg
gtcaaaagcatcgaacggcccgaccgcatcattttcgacctcgatcccggcgaaggcgtg
acctggcccgcactgctcgaggccgcggaactgatgcgcgtgatgctcgtcgagctgggc
ctgcagagctggcccaagaccagcggcggcaagggcctgcatgtcgtcgtgccgatcacg
ccgcggcgcgactacgcgcagatcaaggcctttgcgcaggccgtggcccagcacatggcg
cgcgtcatcccggcgaaattcgtcgccgtcatgggcccgaagcaccgcgtcggcaagatc
ttcatcgactacctgcgcaacggccagggccagaccgcggtcgcggccttctcggcgcgc
gcgcgtccgggcatgggcgtgtccatgcccgtggcctgggagcagctgcccgaactcagc
ggcggcgcgcactggaccgtcgccacggcgcgcgattacctgagcctgcgcaaggacgat
ccctggagcgattactggggcacgaagcagaccatcacgcagggcctgcgtatgctcaag
tga

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