Comamonas antarctica: HUK68_20425
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Entry
HUK68_20425 CDS
T07217
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aant
Comamonas antarctica
Pathway
aant03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HUK68_20425 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aant03400
]
HUK68_20425 (ligD)
Enzymes [BR:
aant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HUK68_20425 (ligD)
DNA repair and recombination proteins [BR:
aant03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HUK68_20425 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QKV55301
UniProt:
A0A6N1X7F5
LinkDB
All DBs
Position
unnamed1:225961..228543
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AA seq
860 aa
AA seq
DB search
MARKPGSARAAAAATAPAAAPAVAPLARYNAKRDFAKTAEPAGTLAPGGERLQFVIQKHW
ASHLHYDFRLELDGVMLSWAVPKGPSFDPAVKSLALQVEDHPVSYNRFEGEIPKGQYGGG
TVIIWDRGHWSPQGDARAGLAKGKLVFSLDGEKLAGLWELVRIAKPGDKRQNQWLLFKKR
DAWARPRSEYDVLTALPDSVVQKPLGQAAQRAGRAASEAPPEAGARRAALPATLAPQLAT
LVDSVPDGHWIVESKFDGYRVLVRIEGDDIRIFTRNGNDWTDKLKPLAEAVAALGVNCAW
LDGEIVVLDDAGVPNVHRLQNAIDHRTRNKDIVLFAFDLPFLGDSDLRALPLQARRGLLQ
QLLEGRESARLRFSPALEAPPGELLSAACKLGLEGVMVKQADAPYVSGRTETWLKLKCQL
RQEFAVIGFTLRSGATRQIGSLLLGYHEDGELRAAGAVGTGWDSATSRALHALLAPLEIK
RSPAVAAKAGSGRWARRKAGSEHWVKPEVVVEVAFGDWTPDQQIRHAVFRGVRTDKPAAE
IVREHAKQPASAAPAPKPARKAAAPASKADPGLMKVTNAQRVIDPSTGLRKIDLVRYYES
VAEWILPHLQQRPVSLVRAPEGITGELFFQKHAERSIAGVTELDAALWPEHAPLLAVNTP
QALLGAAQMNVIEFHTWNSRVKSIERPDRIIFDLDPGEGVTWPALLEAAELMRVMLVELG
LQSWPKTSGGKGLHVVVPITPRRDYAQIKAFAQAVAQHMARVIPAKFVAVMGPKHRVGKI
FIDYLRNGQGQTAVAAFSARARPGMGVSMPVAWEQLPELSGGAHWTVATARDYLSLRKDD
PWSDYWGTKQTITQGLRMLK
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcaagcctgggtccgcccgtgcggcagcagcggccacggcgccggccgcggcg
ccggccgtagcgccgctggcgcgctacaacgccaagcgcgatttcgccaagaccgccgaa
cccgcaggcacgctcgcgccaggcggcgagcggctgcagttcgtcatccagaaacactgg
gcgtcgcacctgcattacgacttccggctcgaactcgacggcgtcatgctcagctgggcc
gtgcccaaggggccctcgttcgatccggcggtgaagtcgctggccctgcaggtcgaggac
catcccgtgagctacaaccgcttcgagggcgagattcccaaggggcagtatggcggcggc
acggtgatcatctgggaccgcggccactggagcccgcagggcgatgcgcgcgccggcctg
gccaagggcaaactggtgttctcgctcgacggggaaaagctggccggtctctgggaactg
gtgcgcatcgccaagcccggcgacaagcggcagaaccagtggctgctgttcaagaagcgc
gacgcctgggcgcggccgcgcagcgaatacgacgtgctcacggcgctgcccgacagcgtg
gtgcaaaagccgctgggccaggccgcgcagcgcgcgggccgggcagcgtccgaggcgccg
cccgaagccggcgcgcgccgggccgcattgccggcgacgctggcgccgcaactcgcgacg
ctggtcgacagcgtgcccgatggccactggatcgtcgaaagcaagttcgacggctaccgc
gtgctggtgcgcatcgagggcgacgacatccgcatcttcacgcgcaatggcaacgactgg
acggacaagctcaagccgctggccgaagccgttgccgcgctgggcgtgaactgcgcctgg
ctcgacggcgagatcgtcgtgctcgatgacgccggcgtgcccaacgtgcaccggctgcaa
aacgccatcgaccaccgcacgcgcaacaaggacatcgtgctgtttgccttcgacctgccg
ttcctcggcgacagcgacctgcgcgccctgccgctgcaggcgcggcgcggcctgctgcag
caactgctcgaaggccgcgaaagcgcgcgcctgcgtttcagcccggcgctcgaggccccg
cccggcgagctgctgagcgcggcctgcaagctgggcctcgaaggcgtcatggtcaagcag
gccgatgcgccctatgtctcgggccgcaccgaaacctggctcaagctcaagtgccagctg
cgccaggagtttgccgtcatcggcttcacgctgcgcagcggcgcgacgcgccagatcggc
agcctgctgctgggctatcacgaagatggcgaactgcgcgccgcgggcgccgtcggcacg
ggctgggattcagccacttcacgcgcgctgcatgcgctgctcgcgccactggagatcaag
cgctcgcccgccgtggccgccaaggccggctcgggccgctgggccaggcgcaaggccggc
agcgagcattgggtcaagcccgaggtcgtggtcgaggtggcgttcggcgactggaccccg
gaccagcagatccgccatgcggtctttcgcggtgtgcgcaccgacaagccggccgcagag
atcgtgcgcgaacatgccaagcagccggcgtcggccgcgccggcgcccaagccggcgcgc
aaggccgcggcgcccgcatccaaggccgatcccggcctgatgaaggtcaccaacgcccag
cgcgtcatcgatccgtcgacgggcctgcgcaagatcgacctggtgcgctactacgaaagc
gtggccgaatggatactgccgcacctgcagcagcggccggtgtcgctggtgcgcgcgccc
gagggcatcaccggcgagctgttcttccagaagcatgccgagcgcagcattgccggtgtc
accgaactcgacgcggcgctgtggcccgagcatgcgccgctgctggccgtcaacacgccg
caggcgctgctgggcgcggcgcagatgaacgtcatcgagttccacacctggaactccagg
gtcaaaagcatcgaacggcccgaccgcatcattttcgacctcgatcccggcgaaggcgtg
acctggcccgcactgctcgaggccgcggaactgatgcgcgtgatgctcgtcgagctgggc
ctgcagagctggcccaagaccagcggcggcaagggcctgcatgtcgtcgtgccgatcacg
ccgcggcgcgactacgcgcagatcaaggcctttgcgcaggccgtggcccagcacatggcg
cgcgtcatcccggcgaaattcgtcgccgtcatgggcccgaagcaccgcgtcggcaagatc
ttcatcgactacctgcgcaacggccagggccagaccgcggtcgcggccttctcggcgcgc
gcgcgtccgggcatgggcgtgtccatgcccgtggcctgggagcagctgcccgaactcagc
ggcggcgcgcactggaccgtcgccacggcgcgcgattacctgagcctgcgcaaggacgat
ccctggagcgattactggggcacgaagcagaccatcacgcagggcctgcgtatgctcaag
tga
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