Paenarthrobacter aurescens: AAur_0283
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Entry
AAur_0283 CDS
T00447
Name
(GenBank) ATP-dependent DNA ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aau
Paenarthrobacter aurescens
Pathway
aau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AAur_0283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aau03400
]
AAur_0283
Enzymes [BR:
aau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AAur_0283
DNA repair and recombination proteins [BR:
aau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AAur_0283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABM08006
UniProt:
A1R1J1
LinkDB
All DBs
Position
complement(292208..294763)
Genome browser
AA seq
851 aa
AA seq
DB search
MAGKQQERVNVEGHELTLTNLNKIIYPETGTTKAEVLEYYAAVAPFLIPAAANRPVTRKR
WVNGVGTAENPGQVFFQKNLEDSAPKWIPRAAIQHSDHTNVYPMVNNLATLTWMAQIASL
EIHVPQWQVDPSGKPLRPDRFVLDLDPGPGAGLPECVEVAKLARSILQDMGMDPVPVTSG
SKGIHLYTGLDGTLKSEQVSAFAKELARALESDHPELVVSDMKKSLRHGKVLVDWSQNSG
NKTTIVPYSLRGKAHPTVAAPRTWRELSSPSLEHLDYVAVMKRVKTGKDHFAPISERHLP
PHGEDENDDDGTAGSSSGTGRSRERVVTVENRLAKYVGMRDPGKTPEPFPSSSAVSASPQ
SAGSSSDQPKPGDPPPPGGIFVIQEHHARRYHLDLRLEHHGVLASWALPRGIPETPDRNN
LAVHTEDHPMEYANFAGVIPKGEYGAGTMTIWDRGEYTCEKWRDGKEVIATLTGEPGGGL
GGTKRFALINTGQNWLIHLMKEQPGGRRGTQPAANAAAPKSAPAQPQPQPMPNYSPMLAT
SGTTADLRGDDWLYELKWDGIRAIITGTESRIRLMSRNGNDLTAAYPELTDRACWPDGDF
VADGEIVALGKGSRPDFGRLQLRMNLVKAADIERARATVPVQLMLFDLLYDDGTDLSGLP
FHERRERLSGFAERWRVGCPLHLSAVLDHDVEDLMTSAAELGLEGVMAKKADSRYVIGRR
SRSWIKLKLEQSQEVVVGGWRPGAGARAGTFGALLLGIPDGDKLHYVGRVGSGFKDWQLR
DIMEKLEPLAIVESPFADIPREDAAGATWVSPELVAEVTFGEWTGPGRLRHPVWRGWRPD
KSAGEVTLAGS
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
gtggcaggcaagcaacaggagcgggtgaacgtggaaggccacgagctcaccctcaccaac
ctgaacaaaatcatctacccggaaaccggcaccaccaaggccgaagtgctggagtattac
gccgcagtggcgcctttcctgatccctgccgctgccaaccggcccgtcacccgcaagcgc
tgggtcaacggagtgggtaccgccgaaaaccccgggcaagtgttcttccaaaagaacctt
gaggactcggcacccaaatggattccccgtgccgccattcagcattcggaccacaccaat
gtttatcccatggtcaacaaccttgcgacgctcacatggatggcccaaatcgcgtcgctg
gaaattcacgtaccgcagtggcaggtggatccttcagggaagccgctccgccccgaccgt
ttcgtcctggacctcgaccccgggcccggggcaggactgcccgagtgcgttgaagtggcc
aagcttgcccgttccatcctgcaggacatgggaatggacccggtccctgttaccagcggc
agcaaaggcatccacctctacactggcctggacgggacgctgaagtccgagcaagtgtcc
gccttcgccaaagagctggcccgtgccttggaatcggaccaccccgagctggtggtcagc
gacatgaagaagtccctccgacacggcaaagtgctggttgactggagccagaacagcggg
aacaagaccaccatcgtcccgtattcgctgcgcgggaaggcccaccctacggtcgccgcg
ccccgcacgtggcgggagctctcctctccttcgctggaacacctcgactatgtggccgtg
atgaagcgcgtgaagacaggcaaagaccacttcgcgccgatctccgaacgccacctgccg
cctcacggcgaggatgagaatgacgacgacggtactgccggaagcagttcaggcaccggc
cgttcccgcgagcgtgtggtgacagtagagaatcgtctcgccaagtacgtcgggatgcgc
gatccgggcaaaaccccggagccgtttccgtcgtcgtcggctgtttctgcctccccgcaa
tcggcgggctcctcctccgatcagccgaagcccggcgatcctccaccgcccggcggcatt
ttcgtcatccaggagcaccacgcccgccgctaccacttggacctgcgcctggagcaccat
ggcgtcctggcttcctgggcactgccgcgtggcatcccggaaacccccgaccgcaacaac
cttgccgttcacaccgaggaccaccccatggaatacgcgaacttcgcgggcgtcattccc
aagggtgagtacggggccgggaccatgactatttgggaccgcggcgagtacacctgcgag
aagtggcgcgacggcaaggaagtcatcgcgacgctcacaggcgagccgggtggtggcctt
ggcggcaccaaacggttcgcgctcatcaatacgggtcagaactggctgatccatctcatg
aaggagcagccgggcgggcgtaggggcacccaacccgcagccaacgccgcggcgcctaag
tccgctccggctcagccgcagcctcagcccatgccgaactactctcccatgctggccaca
tccgggaccaccgccgaccttagaggcgacgattggctgtatgaactcaagtgggacgga
atccgggcgatcatcaccggcacggagagcagaatccggctcatgagccgcaacggaaac
gatctcaccgccgcctatcccgaactgacggaccgcgcatgctggcccgacggcgatttc
gtggctgatggcgaaattgtggcgctcggcaaaggatcgcggcctgatttcggccggctg
cagctgaggatgaacttggtcaaagctgcggacatcgaacgtgcccgggcgacggttccg
gtgcagctcatgctgttcgatcttctgtacgacgacgggacggaccttagcgggctgcct
ttccacgagcgcagggagaggctttccggatttgcggagcgctggcgggtcggctgtccc
cttcacctttccgcggtgctggaccacgacgttgaggaccttatgacgagtgccgccgag
cttggcttggaaggagtcatggctaagaaagccgacagccgttacgtgattggacgccgc
agcaggtcctggatcaagctcaaactggaacagagccaggaagtggtggtgggcggttgg
cggcccggcgccggtgcacgggccgggaccttcggcgcgttgctgctgggcatcccggac
ggcgacaagctgcattacgtgggccgggtgggcagcggtttcaaggactggcagctcagg
gacatcatggagaaactggagcccttggctattgttgagtcgccgttcgcggacattccc
cgggaagacgctgcgggcgctacatgggtgagtcctgagctcgtggcggaagtgacattt
ggggaatggacgggccctggaaggctgaggcatccggtgtggcgtgggtggcgtccggac
aagtccgctggcgaggtaacgctggccggctcatga
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