Alteromonas australica DE170: EP12_08400
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Entry
EP12_08400 CDS
T03858
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaus
Alteromonas australica DE170
Pathway
aaus03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EP12_08400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaus03400
]
EP12_08400
Enzymes [BR:
aaus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EP12_08400
DNA repair and recombination proteins [BR:
aaus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EP12_08400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_30
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJP43683
LinkDB
All DBs
Position
complement(1801427..1804918)
Genome browser
AA seq
1163 aa
AA seq
DB search
MTATLLSLPIPAQKKATSSQDHKHWGQLQGSSPALCIAQAQAQYNGPIVLITADTPSALK
LEKELAFFMADDNVPITLFPDWETLPYDTFSPHQDIVSQRLETLFRFTQQVDGIFIVPIN
TLMQRLAPTDYLAKYLLMLNKGDTLDRDQFRRNLEQAGYLHVSQVMSHSEFSVRGSIIDL
FPMGSDKPFRIDLFDDEVDSIRFFDTETQRSGDAVDKIRLLPAREFPTDKAALNLFRQQF
LEKFDANNAQESVFSQVTKGTMPSGVEYYLPLFFEATATLFDYLHPKSLLLLHGDVQDAS
EFFWADVQERYEQYRYNPARPFLPPEDLFLPINELFGAIKQWPRASLSAYVLDDKPGAFN
LGCDKLDDIAINSQKKAPAQQLINTVNDATQRGAKVLFCAETQGRKEGLLTVLRKAGIKP
SFTPSLNAFLSEGEQVGITVGMVEHSFRWVNNQQELLFITETELLGHKVSQRRRRDKRTA
TDESAIIRNLAELSIGQPVVHLDHGVGRYLGLQTLDAGGVATEYLCIEYAKQSKLYVPVA
SLHLISRYTGGDADTAPINALGSDAWSKAKQKAAEKVRDVAAELLDVYARRAAKPGFAYP
INWEDYQAFADSFPFEETPDQAQAIAAVIHDMGQPQAMDRLVCGDVGFGKTEVAMRAAFL
AANQGKQVAILVPTTLLAQQHHENFKDRFAAWPFEIEVMSRFVSGKAQKSIIERIAEGKV
DIVVGTHKLLSSELKFNDLGLVIIDEEHRFGVRQKEKLKSLRADVDILTLTATPIPRTLN
MALSGMRDLSIIATAPARRLSIKTFVQQRNKAVIREAIMREILRGGQVYFLHNEVDTIAR
TVEEIAEIVPEARIAMGHGQMRERELESVMSDFYHQRYNVLVCTTIIETGIDVPTANTII
MDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAVKRLDAISQLEDLGAGFA
LATHDLEIRGAGELLGDDQSGQIASIGFSLYMDMLDKAVTALKNGKEPSLDDALAGHTEI
ELRIPALLPEDYIADVNTRLSLYKRLAGCTTQDDIDEFQVECIDRFGLLPDAAKNLVQVA
ELKIKAEALGILKVDLSAQGGTIEFKETTKVDPGFIIQLVQTKPNTFKFEGSQKLRVVKH
TETAEQRIALISGIIADFAKESR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgaccctattatcactgccaatacccgcgcagaaaaaagccacatcttctcaa
gatcataaacactgggggcaactgcaaggcagcagcccggcgctttgcattgcacaagcc
caagcacaatataacggccccattgttttaattaccgccgacacaccatcggcgttaaaa
cttgaaaaagaattggccttttttatggccgacgataatgtccctattactctgtttcca
gattgggaaaccttaccttacgacactttctctccccatcaagacattgtttctcagcgc
ttagagaccctatttaggtttacccaacaggtagatggcattttcattgtgcccatcaac
accctgatgcagcgccttgcccccaccgactatttagccaaatacttgttaatgctaaat
aaaggggacaccttagacagagatcaatttagacgcaacttagagcaagctggctatttg
catgtaagccaagtaatgagccatagcgagttttcggtacgtggcagtattatcgacttg
ttccctatgggtagcgataaacccttccgcattgatttatttgacgatgaagtagactcc
attcgatttttcgataccgaaacccagcgttctggtgatgccgtagacaaaatacgttta
ttacccgccagggagttccctaccgataaagcggcactgaatttatttaggcaacagttt
ttagaaaaattcgatgccaacaatgcgcaagagtcggtattttcgcaggttaccaaaggc
acaatgccaagtggcgtagagtattacttaccgctattttttgaagccaccgccacctta
ttcgattatttacacccgaaaagcctgttgttattgcacggagatgtacaagacgccagc
gagtttttctgggccgatgttcaagagcgctacgaacaataccgctataacccggcacgc
cctttcttgcctccagaagatttgtttttgcctataaacgagttgtttggtgccataaag
caatggccgagggcctcgctaagcgcctacgtattggacgacaaacctggggcatttaac
cttggctgcgacaagcttgacgacattgccattaactcgcagaaaaaagccccagcgcaa
cagctaattaacacggtgaatgacgctacccagcgtggtgccaaagtgctcttttgtgca
gaaacccaaggccgtaaagaagggctattaacggtattacgaaaagccggtataaaaccg
agttttacgccatcactcaatgcatttttaagtgaaggcgagcaagtaggcattaccgtg
ggcatggtggaacacagtttcagatgggtgaataaccaacaagaactgctgttcattacc
gaaaccgaactgcttgggcacaaagtaagccaacgcaggcgcagagacaaacgcactgcc
actgacgaaagcgccattattcgaaatttggccgaactgtctattggccagcccgtggtg
catttagatcatggtgtgggaagatatttgggcttacaaaccttggatgccggtggcgtg
gctaccgagtatctgtgtattgaatatgccaagcaatcgaagctgtacgtgccggtggct
tccctgcatttaatttcacgctacacaggcggcgatgcagacaccgcccccattaatgcg
ttagggtcggatgcctggtcgaaagccaagcaaaaagccgctgaaaaagtacgtgatgtg
gccgccgaactgttagacgtttacgcccgccgtgctgccaagcccggtttcgcttacccg
attaattgggaagattaccaagcttttgcagacagtttcccctttgaagaaacccccgat
caggcgcaagccattgcggcggttattcacgatatggggcaaccgcaagccatggacagg
ttggtgtgtggtgacgtgggctttggaaaaacagaggtagccatgcgcgcggctttcctt
gccgcaaaccaaggtaagcaggtggctatattggtgcccaccaccctacttgcccagcaa
catcatgaaaacttcaaagaccgatttgccgcgtggccgtttgaaattgaagtcatgagc
cgttttgttagcggtaaagcacaaaaaagtattatagagcgcatagccgaaggaaaagta
gacatagtggtaggtacccacaaactgctttccagtgagttgaagtttaacgacctaggc
cttgtaattattgacgaagaacacagatttggtgttcgccagaaagaaaaactgaagtcg
cttcgcgccgatgtagacatattaacgctaacggccacgcctattccaagaaccttgaat
atggcgctatcgggtatgcgcgacttatctattattgccaccgcgccagcaagacgtctg
tcgataaaaaccttcgttcagcaacgtaataaagccgtaatccgcgaagcaatcatgcgt
gaaattttacgcgggggtcaggtttacttccttcacaacgaagtagacaccattgcccga
accgtagaagaaattgccgaaattgtgcccgaagcccgcattgccatgggtcatgggcaa
atgcgtgagcgcgaactagaaagcgtgatgagcgacttctatcaccagagatacaatgta
ttggtgtgtacaaccattattgaaaccggtattgatgtgcctactgcgaacaccattatt
atggatagagccgatcatttagggttagcacagttacaccagttgcgtggccgggtgggt
cgctcccatcaccaagcctacgcctatttactgactccgcatcctaagcgaatgacgaaa
gacgcggttaaacgtctggatgccatctcccaattggaagacttaggtgcagggtttgcg
cttgccacgcacgacttggaaattcgtggagccggtgaactcttaggtgatgaccaatca
ggtcaaatcgccagcattggctttagtttatatatggacatgctagataaagccgttact
gcccttaaaaacgggaaagagccttcgcttgatgacgctttagcaggccatacggaaatt
gaacttcgcattccagccttgttacccgaagactacattgccgatgttaatactcgcttg
tcgttgtacaaacgccttgccggttgcaccacgcaagatgatattgatgaatttcaggta
gagtgcatcgacaggtttggcttactgccagatgctgcgaaaaacctcgtgcaagtggct
gaactaaaaataaaagcagaggccttaggtatacttaaagtagacttgtctgcccaaggc
ggtactattgaatttaaagagaccaccaaagtagaccccggctttattattcagttagtg
caaactaaaccgaataccttcaaatttgaaggcagccaaaaattaagagtggttaaacat
acagaaaccgcagagcaacgtattgcactgataagcggtatcattgccgattttgccaag
gagtcgcgatag
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