Aceticella autotrophica: ACETAC_00630
Help
Entry
ACETAC_00630 CDS
T09086
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aaut
Aceticella autotrophica
Pathway
aaut03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aaut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACETAC_00630 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaut03400
]
ACETAC_00630 (mfd)
Enzymes [BR:
aaut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACETAC_00630 (mfd)
DNA repair and recombination proteins [BR:
aaut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACETAC_00630 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Cas_Csd1
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QSZ27472
UniProt:
A0A975AVX9
LinkDB
All DBs
Position
125572..129072
Genome browser
AA seq
1166 aa
AA seq
DB search
MFIKTIGNLREIIDLREAIAGGKTPVLIYGLTDSQKSHITHYIMKEFKKKVLFITYNDVQ
ARMIYEDLDSFTHGNAFLYPSRDVLFFKIEAASLDVIGRRLITIKNVLDDEPHVFVASID
ALLNKMIPQELFKKYTFNYKTGDTLNIEKLAKDLVIMGYERVPLIEGKGQFSIRGGIIDI
YSPMDTDAYRIELFDDIIDSIRKFDIFSQRSIQNINEMVLFPAREFILENENIKNGVTNL
SRNLNSYLSKIRETNSGRLEKVHNKFDEIMERITESKSLANIPGMVNFFYPETYSLIDYF
DDVIIILDENIRIKQRSYNILTEFEENFKLLLEAGEVLPEQAGLLYRYEDIIKKLDGRTY
LLMNTLVKADNEIRPKIIVNFVSKTMHPFHGKIELLAEDLKYYKKNGYRVLILSSNIERA
LILKNTLLNYGFEIPVVEDEEYDIPEGGIAIYPGTISKGFEYVDAKFTVISDVEVFGQSR
KARKAVKIKNGSRIKNFTELNVGSYIVHVNYGIGKYEGIEKITVDGITKDYLKIIYAGGD
KLFIPVEQFDLIQKYIGPEDKPPKLNKLGGSEWARAKKKAKKAVEELAKDLLKLYAKRQT
MKGFAFRKDTPWQKEFEDKFPYEETEDQLRCIQEIKEDMEKEKPMDRLLCGDVGYGKTEV
ALRAAFKAVMDGKQVAFLCPTTILAQQHYTNFIYRFKDFPIKIEMLSRFRRHKEQLNIIK
SLNEGVIDIIIGTHRLLQQDIKFKDLGLLIIDEEQRFGVTHKEKIKKFKENIDVLSLSAT
PIPRTLHMSLIGIRDMSVLENPPEDRYPVQTYVVEFNEEMIRDAILKEIGRGGQVYFVNN
RINGINKMASLINELLPYCRVGIAHGQMEEDKLEKIMVDFLNNEYDVLVCTTIIETGLDI
PNVNTIIVCDADRMGLSQLYQLRGRVGRSNRLAYAYFTYRRDKILTEVAEKRLEAIKEFT
EFGSGFKIAMKDLEIRGAGNLLGAEQHGHIDAVGYDMYLKLLDEAIKSLKGDLKEEKIDT
VIDIKVNAYIDSSYIEDENQKLEMYKKISQIETKEDMEDIIDELIDRFNEYPKPVETLLD
VAYLKVLAQQVSITDIIEKNSSVLLKFKDISSVKAGIVESLTKEYKGNLMFSGKIPPYLT
YRINKKENITKELIGLLEKLKSLQMH
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttgtttataaagaccatagggaatttaagagaaataatcgatttaagagaagctatagcg
ggcggaaaaacaccggttttaatttatggtctgactgattcacaaaaatcccatattaca
cattatattatgaaagaattcaaaaaaaaggtattatttattacatataatgatgtacag
gcaaggatgatatatgaagacttagattcattcacacatgggaatgcttttctctatcct
tcacgggatgtgttatttttcaagatagaagcagcaagtcttgatgtgatcggaagaagg
ctgattacgataaaaaatgttcttgatgatgagccccatgtatttgttgcatcaatagat
gcattattgaataagatgataccacaggaattatttaaaaaatacacatttaattataaa
acgggtgatacactaaatatcgaaaagcttgcgaaagaccttgttataatgggatatgag
agggttcctttaatagagggaaagggtcagttcagtatcagagggggtataatcgatata
tattcacctatggatactgatgcgtataggatagaactatttgatgatattattgattca
atcagaaaatttgatattttctcgcagcgttcgatccaaaatattaacgagatggtcctg
tttccagcaagggaatttatactggagaatgaaaatattaaaaatggtgtaacaaattta
agcaggaatttaaattcatatttatcaaagataagggaaactaatagtggacgtttagaa
aaggtccataataagtttgatgaaatcatggagaggattactgaatccaaaagtcttgct
aatatccctggaatggtaaatttcttttaccctgaaacatattcacttatagattacttt
gatgatgttattataatattagatgaaaatataaggataaaacaaagaagttataatatt
ttaaccgagtttgaagaaaattttaaattattgcttgaagcaggagaggttttaccagaa
caggcggggcttttgtacaggtatgaagatataattaaaaagcttgatggcaggacttat
ctgctgatgaatacccttgtgaaagctgataatgaaatacgaccgaaaataattgttaat
tttgtatcaaaaacaatgcatccatttcatgggaagattgaactattggcagaggattta
aaatattataaaaaaaatggttatagagtactgattttatcaagtaatatagaaagggca
cttatacttaaaaatacccttttaaattatggttttgagatacctgttgtcgaggatgag
gaatatgatatccctgaaggaggtattgcaatatatccgggaactataagcaaaggcttt
gaatatgttgatgcaaagtttacagtaattagtgatgttgaggtatttggacaatcaagg
aaagccagaaaggcagtaaaaattaaaaatggcagtaggataaaaaatttcaccgagctt
aatgtcggttcatatatagtacatgtaaattatggtattggcaaatatgaaggtatcgag
aaaataaccgttgatgggataacaaaggattatttaaagattatttatgcaggtggcgat
aaacttttcataccggtagagcagtttgatttaatacaaaagtatataggacctgaggat
aaacctccaaagttaaataaacttgggggaagtgaatgggcaagggctaaaaaaaaggct
aaaaaagcagttgaagaacttgcgaaggatttgcttaaactatatgcaaaaaggcagaca
atgaaaggatttgcttttagaaaagataccccatggcaaaaagaatttgaagataaattt
ccttatgaggaaacagaggaccaattaaggtgtattcaagaaataaaagaagacatggaa
aaagaaaagccaatggataggcttttatgcggggatgtaggatatggcaaaacggaggtt
gcattaagagctgcatttaaagcggtgatggatggaaagcaggttgcatttttatgtcca
accactatacttgcacaacagcattacacaaatttcatctatagattcaaagattttcca
ataaagatagaaatgttaagcagatttaggagacataaagagcagttaaatataataaaa
tcacttaatgaaggggttatagatattataattggtacacacaggctgcttcaacaggat
ataaaatttaaggacctcggtttacttataattgatgaagagcagaggtttggggttaca
cataaagagaaaatcaaaaagtttaaagaaaatattgatgttctgtcattatctgcaaca
ccaattcccagaacccttcatatgtctttgataggcatcagggatatgagtgtactggaa
aatccacctgaggacagatatcctgttcagacttatgtagtagaatttaatgaggaaatg
ataagagatgcaatcttgaaggaaattggaagaggaggacaggtgtattttgtaaacaat
agaataaatgggataaataaaatggcttcattgataaatgaacttttaccttattgtagg
gttggaattgcccatggacagatggaagaagataaattagaaaaaataatggtagacttt
ttaaataatgaatatgatgtacttgtatgtacaacaattatagaaacaggtcttgatata
cctaatgtgaatacaataattgtttgtgatgccgataggatgggtttatcacagttatat
cagcttcgcggaagagttggcagatcaaatagattggcatatgcttattttacctacaga
agagataagatacttacagaagttgcggaaaaaaggcttgaagccataaaagaatttacg
gagtttggttcagggtttaaaatagccatgaaggacttggaaataagaggtgcgggaaat
ctcttaggcgctgagcagcatgggcatattgatgcagttggatatgatatgtaccttaag
cttcttgatgaagcaattaaaagcttaaaaggggatttaaaggaggagaaaatagatacc
gttattgacattaaagttaatgcatatatagattcttcatatatagaagacgaaaatcag
aagttagaaatgtataaaaaaatttcgcaaatagaaacgaaggaagatatggaagatatt
atagacgaacttattgatagattcaatgaatatccaaaaccggttgaaacacttcttgat
gttgcataccttaaagtacttgcacaacaggttagcattactgatataattgaaaaaaat
tcttctgttttgttaaaatttaaagatattagctctgtaaaggcaggtatagttgaatct
ttaactaaagaatataagggcaatttaatgttttctggtaagattcctccatatctgaca
tacagaataaataaaaaggaaaacattacaaaagaattgatagggcttctggaaaagctt
aaaagtttgcagatgcattaa
DBGET
integrated database retrieval system
