KEGG   PATHWAY: aaw00020
Entry
aaw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alteromonas stellipolaris R10SW13
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aaw00020  Citrate cycle (TCA cycle)
aaw00020

Module
aaw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aaw00020]
aaw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aaw00020]
aaw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aaw00020]
aaw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aaw00020]
aaw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aaw00020]
Other DBs
GO: 0006099
Organism
Alteromonas stellipolaris R10SW13 [GN:aaw]
Gene
AVL56_10780  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AVL56_01690  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AVL56_03630  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AVL56_03640  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AVL56_06580  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AVL56_04720  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
AVL56_10755  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AVL56_10750  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
AVL56_15165  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AVL56_10740  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AVL56_10745  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AVL56_10765  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AVL56_10760  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AVL56_10775  succinate dehydrogenase [KO:K00241]
AVL56_10770  sdhD; succinate dehydrogenase [KO:K00242]
AVL56_05035  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AVL56_15925  aspA; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AVL56_16965  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AVL56_19130  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AVL56_15175  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AVL56_15170  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aaw00010  Glycolysis / Gluconeogenesis
aaw00053  Ascorbate and aldarate metabolism
aaw00061  Fatty acid biosynthesis
aaw00071  Fatty acid degradation
aaw00190  Oxidative phosphorylation
aaw00220  Arginine biosynthesis
aaw00250  Alanine, aspartate and glutamate metabolism
aaw00280  Valine, leucine and isoleucine degradation
aaw00350  Tyrosine metabolism
aaw00470  D-Amino acid metabolism
aaw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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