Croceibacterium atlanticum: WYH_02746
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Entry
WYH_02746 CDS
T03925
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aay
Croceibacterium atlanticum
Pathway
aay03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WYH_02746 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aay03400
]
WYH_02746 (ykoU)
Enzymes [BR:
aay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WYH_02746 (ykoU)
DNA repair and recombination proteins [BR:
aay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WYH_02746 (ykoU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKH43776
UniProt:
A0A0F7KX49
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All DBs
Position
2851314..2853836
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AA seq
840 aa
AA seq
DB search
MARGKSDPLAEYNRRRDFSRTAEPAGKMGQSNGKRRFIVQKHDASRLHWDFRLEVDGVLK
SWAVTKGPSADPDIKRLAVRTEDHPLAYAEFEGTIPEQEYGGGTVMLWDRGTWEPIEGKK
AEDLEEGHLHFILHGERMKGEWLLVRMKPRKGEKRENWLLRKIDDDYAEGGDKLIDTCLT
SVLTGRPMAEIAADEGGEHSLKGKKGEDFAQEMKRAACHNRGKAKRRKSTAKPPAFRKPQ
LATLVDAVPSGNGWMHEIKFDGYRAMVSASGEKVAVYTRSGKDWTDKFGPLAQAIAALDL
PPCLIDGEIVAYDGKGNPDFSTLQKLLKRGKGGQGASDKLAFHAFDLLELDGEDLAPLPN
VERKERLEALLRDAGPPVHVADHVIGAGEKLYEKMCDAGQEGIISKKIDARYTSRRGKAW
VKVKCTRRQEFVIIGWTKSSARGRPFASLVLGQYEDGDLTYKGKVGTGFDADTLEDLARK
FKSLERKTPPVETDRAEARGVTWLTPKLVAEVAFAEFTAEGRVRHASFLGLRSDKKAKEV
KPERPADPPEESEAETVRISSRDRVIFPESGQTKGDLADYYARIAPLMLPFLSGRPVSLV
RCPQGRAKKCFFQKHDTGGFGDHVHHVPIREKDGGTEDYIYVEDATGILACVQMGTIEFH
GWASRSRDVEAPDRMIFDLDPDEGLDFEDVKSAAVDIRDRLAEIGLTSFAMLSGGKGVHV
IAPLRPGHSWEAHKDFAKRFSEALAMADPDRFTATMSKAKRKGKIFIDWLRNQRGSTAVV
PYSARARENAPIAAPIAWGELKNMASAHEFTIDDAKKLLTRAGGKGLSGWGFADQSLPDL
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcggcaaatccgatccgctggcggaatataaccggcggcgcgatttttcccga
acggcggaacctgccgggaagatggggcagagtaacggcaagcgccgcttcatcgtgcag
aagcacgacgcctcccgcctgcattgggatttccggctggaagtggacggcgtgctgaaa
agctgggccgtgaccaagggcccttcggccgatcccgatatcaagcggctggccgtgcgg
acggaagatcatccgctggcatatgccgagtttgaaggcacgatcccggaacaggaatat
ggcggcggcaccgttatgctgtgggaccggggcacgtgggaaccgattgaaggcaagaag
gcggaagatctggaagaagggcatctccatttcatcctccatggcgagcggatgaagggg
gaatggctgctggtccgcatgaaaccgcgcaagggcgagaaacgcgagaactggctgctg
cgcaagatcgacgatgattatgcggagggcggcgacaagctgatcgacacatgcctgacc
agtgtcctgaccgggcggcccatggcggaaatcgccgcggacgagggtggggagcattcg
ctgaaaggcaagaagggcgaggatttcgcccaggagatgaagcgggccgcctgccacaac
cggggcaaggcgaaacgccgtaaatccactgcgaagccacccgcttttcgcaagccgcaa
ctggccacgctggtggatgccgtgccttccggcaatggctggatgcatgaaatcaagttc
gacggctatcgcgcgatggtttccgccagcggggaaaaggtggcggtctatacacgcagc
gggaaggactggacggacaagttcggcccgctggcacaggccatcgccgcgctggatctg
ccgccctgcctgatcgacggtgagatcgtcgcctatgacggcaagggcaatccggatttc
tcgacgctgcagaaactgctgaaacgcggcaagggcgggcagggcgcaagcgacaagctg
gccttccatgccttcgatctgctggaactggatggggaggatctggcgccgctgccgaat
gtggaacgcaaggaacggctggaggccttgctgcgcgatgccgggcccccggtccatgtg
gccgatcacgtgatcggcgcgggcgaaaaactgtatgagaaaatgtgcgacgccgggcag
gaaggcatcatctccaagaagatcgacgcgcgctacacatcccgccggggcaaggcctgg
gtgaaggtcaaatgcacgcggcggcaggaattcgtgatcattggctggacgaaaagctct
gccagggggcgccccttcgcatcgctggttctggggcagtatgaagacggcgatctgacc
tacaagggcaaggtcggcacgggtttcgatgccgacacgctggaagatctggcccgcaag
ttcaaatcgctggagcgcaagacgccgccggtcgaaaccgaccgggccgaagcgcgcggc
gtgacctggctgaccccgaaactggtggccgaagtggcctttgccgaattcactgccgaa
gggcgcgtgcgccatgccagtttcctcggccttcgcagcgacaagaaggcgaaggaggta
aagccggaacgcccggccgatccgcctgaggaaagcgaggcggagacggtaaggatcagc
agccgcgatcgtgtcattttcccggaatcaggccagaccaagggtgatctcgctgattac
tacgcccggatcgcgccgctgatgctgcctttcctttcgggcaggcccgtcagcctggtg
cgctgcccgcaggggcgggcgaagaaatgcttcttccagaaacacgatactggcggtttc
ggggaccatgtccatcacgttccgatcagggagaaggacggcggcacggaggattatatc
tatgtggaggatgccacgggcattcttgcctgcgtgcagatgggcacgattgaatttcac
ggctgggccagccgcagccgcgatgtggaagcgccggaccggatgatcttcgacctcgat
cccgatgaagggctggatttcgaggatgtaaaaagcgccgccgtcgatattcgcgatcgg
ctggccgaaatcggcctgaccagcttcgccatgctttcgggcgggaagggcgtgcatgtg
attgccccgttgcggccgggccattcgtgggaagcgcacaaggatttcgcgaaacgcttt
tccgaggcgctggccatggctgatcccgatcgcttcaccgcgacgatgagcaaggccaag
cgcaagggaaagatattcatagactggctgcgcaatcagcgcggatcgaccgcggttgtc
ccctattccgcccgcgcacgcgaaaatgcgccaattgccgcgcccatcgcctggggcgaa
ttgaagaacatggccagcgcgcatgaattcaccatcgacgatgcgaagaaattgctcact
cgtgccgggggcaaggggctgtccggctggggttttgccgatcaatccctgcctgacctc
tag
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