Candidatus Koribacter versatilis: Acid345_1782
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Entry
Acid345_1782 CDS
T00352
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
aba
Candidatus Koribacter versatilis
Pathway
aba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Acid345_1782
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aba03400
]
Acid345_1782
DNA repair and recombination proteins [BR:
aba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Acid345_1782
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Acid345_1782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
DUF87
AAA_22
SWI2_SNF2
AAA_16
Kinesin
Microtub_bd
UB2H
AAA_5
SLFN-g3_helicase
SRP54
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
ABF40783
UniProt:
Q1IQR7
LinkDB
All DBs
Position
complement(2160215..2162203)
Genome browser
AA seq
662 aa
AA seq
DB search
MDLKVSSPYKPQGDQARAIEQLTGGIRDGEKHQVLLGVTGSGKTFTMAKIIEQLNRPALI
LAHNKTLAAQLYHEFKNFFPNNAVEYFVSYYDYYQPEAYIPAGDVYIEKEATVNDELDKL
RLAATRSLFERRDVIIVASVSCIYGLGSPEAYYGMLLFLEKGQRIKRDDILKKLVEILYE
RTNEDFRRGTFRVRGDVIEIFPTYEDTAYRIEMFGDEVESLSQIDPLFGTVKQKYQRLPI
YPKTHYVMKPERKNSAVTTILEELGWWENELQKQGRLVESQRIHQRTRFDLEMIKEMGYC
HGIENYSRHFTGRLPGEPPPTLLDYMPREFLLFIDESHQTVPQLHGMWHGDRSRKENLIE
YGFRLPSALDNRPLTFEEFENRVNQAVYVSATPGPYELTKAAGVVVEQIIRPTGLIDPEV
EVRPVKGQIDDLLHEIRKRAEKRERVLVTTLTKRMAEDLSEYYTEVGVRCRYMHSEIETL
ERIKILRDLRKGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSQGSLIQTMGRCA
RNLEGRAILYADRMTDSMKKAMDETYRRRAIQEAYNVEHGITPESIVRPVDMALAAIVGA
DYVDLTAQPDEIPEFKSQEQLDKFVEKLEGEMREAAKRFEFEKAAKLRDQIKELRTKEFM
FT
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggatctcaaggtaagctccccgtataaacctcagggcgaccaagcccgtgcgattgaa
caactgaccggcgggattcgcgacggcgaaaagcaccaggtgctgctcggcgtaaccggc
tccggtaagaccttcacgatggcgaagatcatcgagcagctgaaccgcccggcgctcatc
ctggcgcacaacaagacgctggcggcgcagctttatcacgagttcaagaacttcttcccg
aacaatgctgtcgagtacttcgtctcgtattacgactactaccagccggaggcctacatc
cctgctggcgacgtttatatcgagaaagaagcgacggttaacgacgagctagacaagcta
cggctcgcagcgacccggtccttgttcgagcggcgcgacgtgatcatcgtggcgagcgtg
agctgcatctacggccttggttcgccggaagcgtactacggcatgttgctcttcctcgag
aagggccagcgcatcaagcgcgacgacatcctgaagaagctggtcgagatcctttatgag
cgcaccaacgaagatttccggcgcggaacctttcgagtgcgcggcgacgtaatcgagatc
tttccgacttacgaagacaccgcctatcgcattgagatgttcggggacgaagtcgagtcg
ctctcgcagattgatccgctgttcggcacggtaaaacagaagtaccagcggctgccgatt
tatccgaaaacgcactacgtgatgaagccggagcgcaagaattcggcggttaccacgatt
cttgaagaactcggctggtgggagaacgaactgcagaagcagggacgcctggtggaatcg
caacgcattcaccagcgcacgcgcttcgatctcgaaatgatcaaggagatgggctactgc
cacggcatcgagaactactcgcggcactttaccggccgactaccaggcgagccgccgccg
acgttgctcgactacatgccgcgggagttcttgctcttcattgacgagtcacaccagacc
gtcccgcagctacatggcatgtggcacggcgaccgttcacgcaaagagaacctgatcgag
tacggcttccggctgccgagcgcgttggacaatcgtccgctgacgtttgaagagtttgag
aaccgcgtgaaccaggcggtgtacgtttcggcgacgccgggaccgtatgagctgacgaaa
gccgcaggcgtggtcgtggagcagattattcgcccgacgggattgatcgacccggaagtc
gaagtccgtccggtaaaaggacagattgacgacctgctgcacgagatccggaagcgcgcg
gaaaagagagaacgcgtgctggtgacgactctgaccaagcgcatggccgaggacctcagc
gagtactacaccgaggtcggcgtgcgctgccgctacatgcactccgagattgaaacgctg
gagcgcatcaagatcctgcgtgatcttcgcaagggtgagttcgatgtattgatcggcatc
aatctgttgcgcgaagggctcgacttacctgaggtttcgctggtggcgattctggacgcc
gacaaagaaggcttcctgcgctcgcagggctcgctcatccagaccatgggccgttgcgcc
cgtaatctcgaagggcgcgcgatcctttatgcggaccgcatgactgactcgatgaagaag
gcgatggacgagacctatcgtcgccgcgcgattcaggaggcttacaacgtggagcacggc
atcacgccggagtcgatcgttcgcccagtagatatggccctggctgcgatcgtgggcgcg
gactacgtggatctcaccgcgcagccggatgagataccggagttcaaatcgcaggagcag
ttggataagttcgtggagaaactcgagggcgagatgcgcgaagcggccaagcgatttgag
ttcgagaaggcggcgaagctgcgcgatcagatcaaggaactacggaccaaagagttcatg
ttcacttag
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