Acinetobacter baumannii BJAB0715: BJAB0715_01833
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Entry
BJAB0715_01833 CDS
T02727
Name
(GenBank) Transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abab
Acinetobacter baumannii BJAB0715
Pathway
abab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BJAB0715_01833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abab03400
]
BJAB0715_01833
Enzymes [BR:
abab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJAB0715_01833
DNA repair and recombination proteins [BR:
abab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BJAB0715_01833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGQ06479
UniProt:
A0AA86A5C6
LinkDB
All DBs
Position
1920426..1923887
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLLKEIATQHSSLLVLVARNNQHVAQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQQGVLLISASTLAQRVAPY
SWVLGEHFDIKVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFASGQESPI
RIDLFDDEIDSLKFFDPETQRTTTTLKSFTVLPAKEFPLKEGRSVFRDRYSEFFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFDKEQMQTQSMFTTYLPKNCIVITNNDIDTDLTNFW
KEVMRRYEDRRHNMDQPILAPEELFISPNHLLSALNQFPRMLVSAETIEEKAGALNLKTE
QPPKLPVDPKKEKPFSAVKKYIDEANHPVLLVAESAGRRESLKDALRSSLGEIPNVENFE
QFQISQFAIAITNAPLDRGLLLTDQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEDAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNGKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLANGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVETIERAAENIRVLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGIPPQSVKHLFSVHQIRLKAEHLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVMVQLEEYEKRIQFI
NDLLQKLMSELHA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttgcaacagctcaaggccggtgaaaagcgt
tgggtggggtcattattaggttcatcagcagctttattgcttaaagaaattgccactcag
cattcttctttattggtattagttgctagaaacaaccaacatgttgctcaattagaaagt
gaacttgagttttatggagttaagccgacaatttttccggattgggaaattttgccttat
gaccgtttatctccccatcaagatattgtgtcagaacgtcttgctattttatctaatatg
cctcagcaaggcgtattactgatttcagcaagtaccttggctcaacgggttgcaccttac
tcatgggtattgggagaacactttgatataaaagtaggtcaaaaatttgatttagaacaa
caaaaattaaggttagttcaggcgggctaccacttagtagatacagtttatgaccatggt
gagtttgctgtacgcggcagtattatggatatttttgcatctgggcaagaatctccaatc
cgcatagatttatttgacgatgaaattgattctttaaaattctttgacccagaaactcaa
agaacaacaaccacgctaaaaagttttacggttttacccgcgaaagaattccctttaaaa
gaaggacgttcagtttttagagaccgttattctgagttttttcctactgccaatcctaag
aaaaatccaatttatcaggacgttttggatggtatagcatcacctggtattgaattttat
ttaccgctattttttgataaagaacaaatgcagacacaaagtatgtttacaacatactta
ccaaagaattgcattgtaattacaaataatgatattgacactgatttgacgaacttctgg
aaagaagttatgcgtcgttatgaagaccggcgccataatatggatcaacctattcttgct
ccagaagagctatttatttctccaaatcatttgctaagtgctttaaaccagtttccacga
atgcttgtaagcgcagaaactattgaagaaaaagctggtgcacttaatcttaaaactgaa
caaccacccaagttgccagtcgatccgaaaaaagaaaaaccatttagtgccgtaaaaaaa
tatattgatgaagcaaatcatcctgttctattggttgcggaaagcgcaggacgtcgcgaa
agtttaaaagatgcgttgcgttcaagtttaggtgagattccgaatgtagagaattttgag
cagttccaaattagtcagtttgcaattgctattactaatgcgcctctagatcgtggctta
cttttaactgatcaattaacggttatttcagaaaatcagctttacgagcaccgagttgta
cagcgtcgtcgcaagcgtcaacaggaagtttccgaagagtttctgattcgaagcttaact
gagctcagcattggtgctcctgttgtacatatcgatcatggtgtggggcgttatgctggc
ttaattacactcgcgattgaaggacaagactatgagttcttacaactagattatgccgaa
gatgcaaaagtctatgttccagtaacgaacttgcatctaattagccgttatagtggtggc
gacccggatttagcaccgttacataaaatcggaactgatgcttggagtaaagctaagcgt
aaagcattagaacaaattcatgacgttgcagccgagcttttacatattcaggcacgtcgt
cagtcaaaacctggctttgcttttgaactggatcagtcgctctatatgcaatttgcaagc
ggttttgcgtatgaagaaacccttgatcaggctaatgcaattgaagccacgctctatgat
atgcagcaagcaaaaccaatggataggttggtttgtggtgatgtgggttttgggaaaacc
gaggtggccatgcgtgcagcatttgtcgcagtacaaaatggcaaacaggttgctgtttta
gttcctacgactttactagctcaacaacattatgagtcttttaaagaccgttttgctgat
tggccagtacgtattgaagtgctctcacgttttggttcaaacaaaacacatttgaaaaat
attgaagacttggcaaatggtaaagtcgacattgtggtaggtacacataagcttctacaa
gagaatgttcagtttaaagatttaggcttaatggttgtagacgaggagcatcgctttggt
gtgcgtgataaggagcgtatcaaagctttacgtgccgatgttgatatgttgacacttaca
gcaacgccaattcctcgtacgcttaatatggctttttcgggtatgcgtgatttgtcgatt
attgcgactccgccagcccgtcgattagcagtaaaaacctttgtgcaagagcatacagat
gcttcaatcaaggaagcgattttgcgtgagttacttcgtggtggacaagtttatttctta
cataatgaagtagaaaccattgagcgagctgccgaaaatattcgtgtgcttgtacccgaa
gcacgtgtagcggtagcacatggacaaatgcgtgaacgcgaacttgagcaagttatgcag
cagttctatcacaaagaatataatgtgctggtgtgctcaaccattattgagacaggtatc
gatgttccaaatgccaatacaattttaattgaacgtgcggataaacttggtttagcgcaa
ttacaccagttacgtggccgtgtaggtcgttcacatcaccaagcatacgcctatttgtta
gtaccttcgattaaacacttaaaaggtgatgccgaaaaacgccttgatgcgattcaacgt
gcttcgacattaggtgcaggctttatgctcgctacggaagatttggaaattcgtggagca
ggcgaattgttaggtgagcaacaaagtggctcaatgcaggcgataggatatagcttgtat
atggaaatgcttgagaaagcgactaaagcaattcaacaaggtaaaaccccgaattttgat
gctccattgtcgttaactgccgaaattaacttacatattcctgcacttattccagatgat
tatctgggtgatgttcatcaacgtctattattctataaacgtattagtaataccgataca
caggaaaaactagataacatccgtatggagcttattgaccgtttcggtattccaccgcag
tcggttaagcacttgtttagcgtgcatcaaatccgtttgaaagcagaacatttaggtatt
acgaaaattgatattaatactcaaggtggaaatattgagttttcaccagatacgccagtt
caagccattagtattattcagttaatgcaaaaaaatccgacctattaccgtatggaaggc
ggacaacgtttgaaggtgatggtgcagcttgaagagtatgaaaaacgaattcaatttatc
aatgatttattgcaaaaattgatgagtgaactacatgcctga
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integrated database retrieval system
