Luteitalea pratensis: LuPra_01460
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Entry
LuPra_01460 CDS
T04394
Symbol
ykoU_2
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
abac
Luteitalea pratensis
Pathway
abac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
abac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LuPra_01460 (ykoU_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abac03400
]
LuPra_01460 (ykoU_2)
Enzymes [BR:
abac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LuPra_01460 (ykoU_2)
DNA repair and recombination proteins [BR:
abac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LuPra_01460 (ykoU_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMY08266
UniProt:
A0A143PIN6
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All DBs
Position
1758946..1760937
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AA seq
663 aa
AA seq
DB search
MHAMARDKTTGRAPGTHRPRGAATTMPDYAPQLATLVAAAPDSDEWLHETKYDGFRTGLI
IDRGRARLLTRNGLDWSARFPDLVDAALRLPVSSALLDGEVALELPDGRTSFQGLQNTGR
RKGALTCFLFDIHWLDGEDLTSLPLEERKARLEPLLARRRKSPFRYSTHVIGDGTRVHAE
ACRARMEGIISKRRDAPVTPGRSRAWVKVKCVGRQEFVIGGFTDPQGAREGLGALLIGHH
EDGRLVWAGKVGTGFTTRSARELRTRLDQLVQETSPFTPPPRGAAGAHWVRPELVAEVAF
TEWTEGGKIRHPSFQGLREDKPAKSVVRERAALPASTARATSIRAAAPARSTAGPALRAR
PVSGRADRRAAAAAPTVIRGISISNPQREMYPGEGITKLDLVRYVAAIGDWMLPHVAGRP
LTLVFCPDGIGGECAYLKHGKSWGPKTLRRVKLREKTKVGEYMVADTIEGLVSIMQMNWL
EVHTWNSTIGHVEYPDRVVIDLDPGPDVPWKDVVAAARETRTVLADAGLESWPKTTGGRG
LHVVAPLAPGASWREGLAFTQGIAESLVQESPARYTTAFSKAGRDALILVDVMRNNRAST
VVAAYSPRARAGAPVSTPLSWDELSARRPPDRFTVRTVPRRLARLGADPWQGYWTATQRL
PGR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcacgccatggcccgcgacaagacgacaggtcgtgcccccggcacccaccgcccacgc
ggcgcggcgacgaccatgcccgactacgcgccgcaacttgcgacgctggttgcggcggcg
cccgactcggacgaatggctgcacgagacgaagtacgacgggttccgcacggggttgatc
atcgaccgcggccgcgcgcgactgctcacgcgcaacggcctcgactggtcggcgcgattc
cctgatctcgtggacgcagcgcttcggctaccggtttcatccgccttgctcgacggcgag
gtggcgctcgaactgcccgacggcaggacgagtttccagggtctgcagaacacggggcgt
cgcaagggagccctgacctgcttcctcttcgatattcactggctcgacggagaggacctg
acgtcgctccccctcgaggagcgcaaggcacgcctcgaaccgctgctcgcccggcgaagg
aagtcgccgttcaggtactcgacgcacgtgatcggcgatggcacacgcgtgcacgccgag
gcgtgtcgcgcgcggatggaaggcatcatctccaaacgccgggacgccccggtgacaccg
ggccgctcgcgcgcgtgggtcaaggtcaagtgcgtgggtcgccaggagttcgtcatcggc
ggcttcactgatccacagggcgcgcgggaggggcttggcgcattgctcatcggccatcat
gaggacggccgcctcgtctgggctggcaaggtgggcacgggcttcaccacgcgatccgct
cgcgagctgcggacgcgactcgatcagctggtgcaggaaacctcgccattcaccccgccg
cctcgcggtgccgctggcgcgcactgggtgcgtcccgaactggtcgcggaggtcgccttc
accgagtggaccgagggcggcaagatccgccacccgtcattccagggacttcgtgaggac
aagccggcgaagagtgtcgtgcgcgagcgtgcggcactaccagcatcgaccgcccgcgcc
acgtcaatccgtgctgccgcgccggcccgttcgacggcagggcccgctctccgcgcgcgg
ccggtatctgggcgtgccgatcggcgcgccgcggcagcggccccgaccgtcatccgcggt
atctcgatctcgaatccacaacgcgagatgtatcccggcgagggcatcaccaagctggat
ctggtgcgctacgtcgccgcgatcggcgactggatgctgccccacgtcgcgggccggccg
ctcacgctggtcttctgtcccgacggcatcggcggcgagtgcgcgtacctgaaacacggc
aagtcttggggcccgaagaccctgcggcgcgtgaagctccgggagaagaccaaggtcggc
gagtacatggtcgccgataccatcgagggactcgtgtcgatcatgcagatgaattggctc
gaggtgcacacctggaactcgacgatcgggcatgtggagtacccggaccgcgtcgtcatc
gatctcgatcccgggcccgacgtgccctggaaggacgtcgtcgcggcggcccgtgaaacg
cgaaccgtgctcgccgacgcagggctcgagtcgtggcccaagacgaccggagggcgcggg
ctgcacgtcgtcgcgccgctcgccccgggcgcctcgtggcgggaaggcctggcgttcacg
cagggcattgccgagtcgctggtacaggagtcaccggcgcgctacacgacagcgttttcg
aaggccggccgtgacgcactcatcctcgtggacgtcatgcggaacaatcgcgcgagcacg
gtcgtcgccgcgtactcgccgcgtgcgcgggccggggccccggtctccacgccgctatcc
tgggacgaactgtccgctcggcggccgcctgatcgattcacggtccgcacggtgccgcgc
cggctggcgcggctcggcgccgacccctggcagggctattggactgccacgcagcgactg
cccggacggtga
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