Anaerolineaceae bacterium oral taxon 439: BEQ56_03225
Help
Entry
BEQ56_03225 CDS
T04463
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abao
Anaerolineaceae bacterium oral taxon 439
Pathway
abao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BEQ56_03225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abao03400
]
BEQ56_03225
Enzymes [BR:
abao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BEQ56_03225
DNA repair and recombination proteins [BR:
abao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BEQ56_03225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
RecG_dom3_C
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AOH42573
UniProt:
A0A1B3WNM8
LinkDB
All DBs
Position
complement(684534..687956)
Genome browser
AA seq
1140 aa
AA seq
DB search
MNSKAALLDMIRAQPFFHELRKFRLERGGRGWIRSGRPLLIAALASDPKLAEVGTRPILI
LTDKPSTANLIADELQFWVESRPVQIFPAPDPLFYEPGAWGPEIRAERIRVLTSLAKRAL
PGETKGAAAPLIVAPLRAVMTRTIDRKAFLKATKILRVSQQASPTALARLWRETGYAGGE
IVREQGSFSLRGGLLDVWPYTEKTPVRLDFFGDDLDAMYTFDAATQRNTSRAERILVPPA
REVFTPALADGTFADIETDEFMIPLRNRIQACLLDYLPSNTLIVFDDELRIMDQADDIEE
QAERQRGVSVFDHLLPEDFPQPYVSMSELRDRMESFDLLNLGARGETEDDNAANFSDFEP
AERFGGKLSDMVQAAFQSEAAGVPVTIVSRQSARLQKMIDAALLAEEELKPPVVLNGTLR
EGFRLIGENGEARAQLWSDQEIFGWERPVPRRKTQRAVETSENGIDEFRPGDWLVHIDYG
IGQYAGIVTRSIDGSSKEFLKILYAAGDELYVPVHQADRVTNYIGPDLSEPVPTRLGTTE
WLNVRQHVKEKVVEVAEDLIELYAKRQVVDGYAFPEDSPWQQDLEGAFPYFETEDQKKAI
DAVKADMERPRPMDRLICGDVGFGKTEVALRAAFKAATAGKQVAILVPTTVLAQQHYETF
SQRFAPFPVTVEMLSRFRTASEQRRILADLADGKIDVIIGTHRLVSADVRFKDLGLVVID
EEQRFGVAQKEYLKKLRTKVDVLTMSATPIPRTLYMALTGARDISSITTPPDDRVAVITH
AGPYSEKLVRQAILRELERDGQIFYLHNRVQSIYVVKQQLEALVPQARIGVGHGQLPEKE
LSAVMDAFYRHEIDILLSTSIIESGLDVPNANTLIADHADALGLAQLYQIRGRVGRSTQR
AYAYFFRNTKSTPEGIERLDVIAENTQLGAGYSIAMRDLEMRGAGELLGHKQSGAIAAIG
FSLYTRMLAQAVKTVKEIRGVEIPDEDIAVTREMGLLFDPITVELPLDIGIPESYVAERT
TRIKLYRRIAAVHDSMKLEALRDEFTDRFGPLPEPLGNLFYQIQLKILAERIGLSAVVKE
AAAIVLRFPPLPGNVETRGLEDVGQGIRAGKNAYWLTGLDFETDDWREAVLARMERVAKM
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgaattccaaagccgcgcttctcgatatgattcgggcgcagccgttttttcacgagctg
cgcaagtttcgcctggaacgcggcggccgtggatggattcgaagcgggcggcccttgctg
atcgcggcgcttgcttcggatccaaagctcgcggaagtcggaacccgtccgatcctgatc
ctgaccgataagccgtcgacggcgaacctgatcgccgacgagcttcagttctgggtcgag
tcccggccggtccagatatttcccgcgccggacccgcttttttacgaaccgggcgcatgg
ggcccggaaattcgtgctgagcgaatccgtgtcctgacttcgttagcgaaacgcgcgctt
cccggtgaaacgaaaggggccgcggcgccgctgatcgtcgcgccgttgcgggcggtcatg
acgcggacgatcgaccggaaggcgtttcttaaagcaacgaaaattctccgtgtctcccag
caggcaagtccgacggcgctggctcgcctctggcgtgagaccggctacgccggcggcgaa
atcgtccgggaacagggatcgttttcgctgcgcggcggactcctcgacgtttggccatat
accgaaaaaacgccggtccgcctcgattttttcggcgatgatctcgacgcgatgtatacc
tttgacgcggcgacgcagcgcaacaccagcagagcggagcggatcctcgttcctccggcg
cgcgaggtttttacgccggctcttgcggatgggacgttcgccgatattgaaaccgacgag
ttcatgatcccgctgcggaaccggattcaggcctgtttactcgattatcttccatcaaat
acgctgatcgtctttgacgacgagcttcggatcatggatcaggcggacgatatcgaggaa
caggcggaacgccagcggggcgtgtcggtttttgatcaccttctccccgaggattttccg
cagccgtatgtttcgatgtcggagctacgggaccggatggaatcgtttgatcttctgaac
ctgggggcgcgcggcgaaacggaggatgataacgccgcgaacttcagcgattttgaaccg
gcggagcgcttcggcgggaagctgagcgacatggtccaggccgcgttccaaagcgaagcg
gcgggcgttccggtcacgatcgtcagccggcagtccgcccggctgcaaaaaatgatcgac
gctgcgcttctcgctgaagaagagcttaaaccgccggtggtcctgaacgggacgcttcgc
gaagggttccgcctgataggcgaaaatggggaagcgcgggcgcagctctggagcgatcag
gagattttcggttgggaacggcccgttccgcggcgaaaaacgcagcgcgcggtcgaaacg
tcggaaaacgggatcgatgagttccggcctggcgactggcttgttcatatcgattacgga
atcggtcagtacgccgggatcgtaacgcgctcgatcgacggttcatcgaaggaatttcta
aaaattttatatgccgcgggcgacgagctttacgtcccggttcatcaggccgatcgggtt
acgaattatatcggcccggacctgagcgagccggttccgacccgcctggggacgacggaa
tggctgaacgtcaggcagcatgttaaagagaaggtcgtcgaggtcgcggaagacctgatc
gagctgtacgcaaagcggcaggtcgtcgacggttacgctttcccggaagacagtccctgg
cagcaggatctcgaaggcgcgtttccatactttgaaacagaggaccagaagaaggcgatc
gacgcggttaaggcggatatggagcggccgcggccgatggaccgattaatctgcggcgac
gttggtttcggaaaaactgaggtcgcgctgcgcgccgcgtttaaggcggcgacagcaggg
aagcaggtcgcgatcctggtcccaacgaccgtcctggcgcagcagcattacgaaaccttt
tcgcagcgattcgccccattcccggtcacggtcgaaatgctttcccgatttcggaccgcc
tcggaacagcgacggatccttgccgatctggccgatggaaaaatcgacgttattatcggg
acgcaccggctcgtttccgccgacgttcgcttcaaggatcttggtctcgtcgtgatcgac
gaggagcagcgcttcggcgtcgcgcagaaggaatacctgaaaaagctgcggacgaaagtc
gacgtattgacgatgtcggcaacgccgatcccccggacgctgtacatggcgttgacaggc
gcgcgcgatatttcgagtattacgaccccgcccgacgaccgcgtcgccgtgataacgcat
gccggtccgtattccgagaagctcgttcgtcaggcgattttgcgggagctcgaacgcgac
ggccagatcttctatctccataatcgcgttcagtcaatctatgtcgttaagcagcagctg
gaagcgctcgttcctcaggcacggatcggcgttggacatggtcagcttccggaaaaggag
ctttcggcggtcatggacgcgttttaccgccatgaaattgatatccttttaagcacttcg
attatcgaatccgggcttgacgttcccaacgcgaatacgctgatcgccgatcatgccgac
gcgctgggcctggcgcagctgtaccagattcgcggacgcgtcggacggagcacgcagcgc
gcctacgcttattttttccgaaatacgaaatcgacgccggaagggatcgaacgccttgac
gtgatcgctgagaatacacagctgggcgcgggatattcgatcgcgatgcgcgatctggag
atgcgcggcgcaggcgaactgttagggcataagcaaagcggagcgatcgccgcgatcggt
ttcagcctttacacgcgcatgctggcgcaggcggtcaagacggtcaaagagatcaggggc
gttgagattcccgacgaggatatcgcggtgacccgagagatggggctgcttttcgatccg
attacggtcgagcttccgctcgatatcggaattccggaaagctacgtcgcggagcggacg
acgcggattaaactgtaccggcgaattgcggcggtgcatgactcgatgaagctggaggcg
ctgcgggatgagtttaccgatcggtttgggccgcttcctgaaccgcttgggaaccttttt
tatcagatccaactgaagatcctcgccgagcgaatcggactttcggctgtggtaaaggag
gcggctgcgatcgtgctgcgcttcccgccgctgccggggaacgtcgagacgcgcggactg
gaggacgtcgggcaggggattcgagctggaaagaacgcttactggctgacagggcttgat
tttgagacggacgactggcgggaagctgttctggcgcggatggagcgggtagctaagatg
taa
DBGET
integrated database retrieval system
