Acidisarcina polymorpha: ACPOL_1798
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Entry
ACPOL_1798 CDS
T05576
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
abas
Acidisarcina polymorpha
Pathway
abas03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
abas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACPOL_1798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abas03400
]
ACPOL_1798
Enzymes [BR:
abas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACPOL_1798
DNA repair and recombination proteins [BR:
abas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACPOL_1798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AXC11140
UniProt:
A0A2Z5FWQ1
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All DBs
Position
1909437..1912214
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AA seq
925 aa
AA seq
DB search
MATRRKGAAKPSTQATPADAIDAQLERYRSMRDFDVTAEPSGGKKTEAAPQGLPFVIQKH
AATRLHYDFRLGWNGVLKSWACAKGPSYVTADKRLAVQVEDHPMEYGGFEGIIPKGQYGG
GTVMLWDEGTWEPQPGHTDVDEGLRTGSLKFIMHGTKMKGKWTLIRMGGKAASESKPNWL
LIKEHDDFERKPDDPAITEEAPNSVVTGRSLEEIARNEDHVWNSKETATGNAWHRNDQQS
KSEKPVTTAGAASKKSAVRAGAASNNAASNNFEAELKKTPKEKLPDFIRPQLASQATKPP
ADKGWIHELKLDGYRIQARKDGERVQLLTRTGLDWTHRMKTIAAEVAKLPADNFLADGEV
VVLADDGTTSFADLQAAFQEGIRKPLTYFVFDLLHLNGHNLRGLPLLERKAMLAKLLHES
GEFVRLGEHLETDGATMFRKACEFGAEGIVSKRADSPYSSSRSSSWLKLKCIRGQEFVIG
GFTLPSNGIHGVGALLLGYYQDKKLIYAGRTGTGFTQKTHAKLRDQLDKLRQSSTAFEKP
PAEARKGAIWVRPELVAQVNFSTWTADNLVRQASFQGLREDKPASEVVREAAGTSPKPRI
PKHADPAPSAEKAVPSLASRNNTGEGKTQHAPIRLTHPDKILDAASQLTKQQLADYYWQI
APFMLPHIAGRPLSLVRCPEGSGQPCFFQKHASNMLPKSLESVEVRDKKTGKIEPYITLS
TQTALAELAQLGVLELHPWGSRNEDLEHPDRIIIDLDPDTAIEWQTLAASAAEVRAALKK
LHLESFLKTTGGKGLHVVIPIEPEYDWGVVKQFAHAFALSMEKQNPALYLTKMTKSARAG
RIYIDYLRNERGATAVAPFSPRARPEANVSMPINWSELKLPERPTFRVVDFAEWSSRLKR
DPWKRLPATNQRITPEVLSSFKISA
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaggcgcaaaggcgcagccaagccgtcaacccaagccactcccgcagacgca
atcgacgcgcaactggaacgctatcgctccatgcgggatttcgacgtcaccgcggagcca
agtggcggcaagaaaactgaggccgctccccaaggattgcccttcgtcatccagaaacac
gccgccactcgtctccactacgacttccggctgggctggaatggagtgctcaaaagctgg
gcttgcgccaaaggccctagctacgtcaccgccgacaaacggctggccgtccaggtcgaa
gaccaccccatggagtacggcggctttgaaggcatcatccccaaaggccaatatggcggc
ggcaccgtcatgttgtgggatgaagggacctgggagccgcagcccggccacaccgatgtg
gacgaaggcttacgcaccggctcactcaaattcatcatgcatggcacgaagatgaaggga
aagtggacgctgatccgcatgggtggcaaagccgccagtgagagcaagcccaattggctg
ctgatcaaggaacacgacgactttgagcgaaagccggacgatcccgcgatcacggaagag
gccccgaacagcgttgttaccgggcgcagcctcgaggagattgcccgcaacgaggaccat
gtctggaactcgaaggaaacagctaccggcaacgcctggcaccgtaacgaccaacagtca
aagtccgaaaagccagtaactactgccggcgccgcttcaaagaagtccgctgttcgagcc
ggggcagcatcgaacaacgccgcgtcgaataacttcgaagccgagctaaagaaaactccc
aaggaaaagctgccagacttcattcgtccccaattggcttcgcaggccacgaagccgccg
gctgacaagggctggattcatgagctgaaactcgatggctaccgaattcaagctcgcaaa
gacggcgaacgagttcaacttcttacccgcaccgggctcgattggacccatcgcatgaag
accatcgccgctgaggtggccaaactccccgctgacaacttccttgccgacggcgaggtc
gtggtgctcgccgacgatggaaccactagctttgccgacctgcaggctgcttttcaagag
ggaatccgcaagccgctgacctacttcgtcttcgacctgcttcatctcaacggccacaac
ttgcgcggcctgcccctgctcgaacgcaaggccatgctggcgaagctcctccatgagagc
ggcgagtttgtgcgtcttggggaacaccttgaaaccgatggcgcgaccatgttccgcaag
gcctgcgagttcggcgccgagggcatcgtctccaagcgcgccgatagtccttacagcagt
tcgcgcagctcctcttggctcaagctgaagtgcatccgaggccaggagttcgtcatcggc
ggcttcactcttccctcgaacggcattcacggcgtaggcgcgctgctgctcggctactat
caggacaagaaactgatctacgctggccgtaccggaaccggatttacccagaagacccac
gccaaactgcgcgatcagttggacaaactacgccagtcctccaccgctttcgagaagccc
cccgccgaggcccgtaagggcgcgatctgggtcaggccggagctcgtcgctcaagtcaat
ttctctacttggaccgccgacaacctcgtccggcaagcatcttttcagggccttcgcgag
gacaagccggccagtgaagtcgttcgcgaagcagccggcacttctccaaagcctcgcatt
ccaaagcacgccgatcctgcgccttcagctgagaaagccgttcccagcctagcctctcgc
aacaacaccggcgaaggaaagactcagcatgccccgatccgcctgactcatcccgacaaa
attctggacgccgcctcgcagctcaccaagcaacaacttgctgactattattggcagatc
gcgcctttcatgcttccgcatattgcagggcgtccgctctcgctcgtgcgctgtccggaa
ggcagtgggcagccctgtttctttcagaaacacgccagcaacatgcttcccaaaagcctc
gaatccgtagaggttcgcgacaagaagactggcaagattgaaccctacatcacgctttcg
acccagacggcgctcgctgaactggcgcaactgggggtgctcgaactccacccctggggt
tcccgtaacgaggatctggagcatcccgaccgcatcatcatcgacctcgatccggatacc
gccatcgaatggcagacgcttgcggccagcgccgcggaagtccgcgccgccctcaagaag
ctacacctcgagagctttctcaagaccaccggcggcaagggattgcacgtcgtcattccg
atcgagcctgaatacgactggggggtcgtgaagcaatttgcgcacgccttcgccctcagc
atggagaagcaaaatccggccctatacctcaccaaaatgaccaagtccgcccgcgccggt
cgcatctacatcgactatctccgcaacgaacgcggcgctactgcggtggctcccttttca
ccccgggcccggcccgaggcaaacgtctccatgccgatcaattggtcggagctgaagctc
cctgaacgccccaccttccgcgtcgtggacttcgctgagtggagcagccgcctgaaacgc
gatccctggaagcggctgccagccactaaccaacgaatcacccccgaggtcctcagctcc
ttcaaaatctctgcttga
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