Georhizobium profundi: D5400_08505
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Entry
D5400_08505 CDS
T05798
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
abaw
Georhizobium profundi
Pathway
abaw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
abaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D5400_08505 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abaw03400
]
D5400_08505 (ligD)
Enzymes [BR:
abaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D5400_08505 (ligD)
DNA repair and recombination proteins [BR:
abaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D5400_08505 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AZN71303
UniProt:
A0A3Q8XQE8
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All DBs
Position
1812969..1815557
Genome browser
AA seq
862 aa
AA seq
DB search
MASADPLSTYNAKRDFTRTREPKGKKARTRKDKLRFLVQKHDATRLHYDLRLEWGGVLKS
WAVTRGPSVDPGDKRLAVMTEDHPMSYGDFEGVIPKKEYGGGTVMLWDQGTWEPLHDPEE
GLKEGKLHFNLHGERMTGGWALVRIKPRKGEKRDNWLLIKERDAVAESFEGETGDIITTA
NMTSITSGRSMEEIAASADAVWSSSAKPAAKTAKTEAAQAKRAKRSSTIAMPDFEPPMLA
TLVDAAPEGDDWLHEVKFDGYRLMAAIGGKGVALYTRTGLDWTDKFPDVAKALEGLNCKS
ALIDGEVMASDIKDGGSAFSALQKAIKGGAAKRFFAFDLLALNGKDLKKNPLIERKEALS
QLISDSTATAVVQYSEHVRGHGPSVFRSICKAGQEGIIAKKADAPYRGRRGREWLKVKCT
KRQEFVIGGYSKSDKRGRAFASLLLGTREGEKLVYRGRVGTGFTGETLEELGALLKERTR
KSMPFESVDAQFRRDAVWVKPDLVAEVDYAELTDDGHIRHGSFLGLREDKAADDITLESA
SSDKGTDMSADDEPITPKQNARAKSAASEEVLGIKISSPYRVVFPKQGVTKIDLARYFAV
AADRMLPFVAGHPVSLVRCPQGRTKQCFFQKHASDGFPAEIKRVPIKENSGDTEDYMVLD
SAEALVAAVQMGTLEFHIWGSNMTDLEKPVRMVFDLDPDERLTFDDVREAAFAMRDRLAE
LKLQSVPMVTGGKGVHVIVPLQRRATWTEVKAFSKSFATAFAEEEPDRFVATMSKAKRKG
RIFIDWLRNERGSTAIAPYSTRSREGAPVATPVSWEELAGLEEANSFRLHDMPERLEAPD
PWADATGWRQSLTRAMLKAFSG
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgctgatccgctttcaacctacaacgccaagcgggatttcacccgcacacgc
gagcccaagggcaagaaggcgcgcacgcggaaggacaagctccgatttctcgtgcagaag
cacgacgcgacgcgtctgcactacgatctgcgcctcgaatggggaggggtgctgaaaagc
tgggctgtcacccgcggcccgagcgtcgatcccggagacaagcggctcgccgtcatgacc
gaggatcatccgatgtcctatggcgatttcgagggcgtgatccccaagaaggaatatggc
ggcggcaccgtgatgctctgggaccagggcacgtgggagccgctgcacgacccggaagag
ggcctcaaggaaggcaagctgcacttcaacctgcacggcgagaggatgacgggcggctgg
gctctcgtccggataaagccgcgcaagggcgagaagcgcgacaactggcttctgatcaag
gagcgggacgccgtggctgaaagcttcgaaggcgaaacgggcgacatcatcaccaccgcc
aacatgaccagcatcacgtccggccggtcgatggaggagatcgccgcttcggccgacgcc
gtatggtcgtccagcgcgaaaccggcagccaagaccgccaagacggaagcagcgcaggcg
aagcgcgccaagcgatcatcaaccatcgcgatgccggacttcgagcctccgatgctggcg
acgctcgtcgacgccgcgcccgagggggacgactggctgcacgaggtgaagttcgacggc
tatcgcctgatggcggcgatcggcgggaaaggcgttgccctctacacccgcaccggtctg
gactggacggacaagtttccggacgtcgccaaggcgctcgaagggctgaactgcaagagc
gcgctgatcgacggcgaggtaatggcaagcgacatcaaggatggtggctccgcattctcc
gcactgcagaaggcgatcaagggcggcgcagccaaacgcttcttcgcattcgacctgttg
gcgctgaatggcaaggatctgaagaagaatccgctgatcgagcgaaaggaagcgctttcg
cagctgatctccgacagtacggccacagccgtggtgcagtacagcgagcatgtgcgcgga
catggtccgagcgttttccgctccatctgcaaggctggtcaggaaggcatcatcgcgaag
aaggcggatgcgccttatcgcggccggcgcggacgcgaatggctcaaggtgaaatgcacc
aagcggcaggaattcgtcatcggcggctactcgaaatccgacaagcgcggcagggctttc
gcctcgcttcttcttggaacgcgggaaggcgaaaagctcgtttatcgcggccgtgtcggc
accgggttcacgggcgagacgctcgaggaactcggcgcgctattaaaggagcgcacccgc
aaatcgatgcccttcgaaagtgtcgacgcacagttccgtcgtgacgccgtctgggtaaag
cccgacctcgtggccgaggtggactatgcggagctgaccgatgacgggcacatccgccat
ggctcatttcttggcttgcgcgaagacaaggcggcggacgacatcacgctcgaaagtgca
tcttcagacaaggggacggatatgagcgcggacgacgagcccatcacgcccaaacaaaat
gcgcgcgccaagagcgcggcttcggaagaagtgctcggcatcaagatcagcagtccctac
cgcgtcgtctttccaaagcagggcgtcaccaagatcgacctcgcccgttactttgcggtg
gctgcagaccggatgttgcctttcgttgccggtcatcccgtgtcgcttgtgcgctgcccg
cagggacggaccaagcagtgcttcttccaaaagcatgccagcgacgggttccccgccgag
atcaagcgagtgccgatcaaggagaattccggcgataccgaggattacatggtcctcgac
agcgccgaggccctcgtcgccgcagtccagatgggaacgctcgagttccatatctggggc
tcgaacatgaccgacctcgaaaagccggttcgcatggttttcgatctcgatcccgacgag
cggctgactttcgacgatgtgcgcgaggctgcatttgccatgcgcgaccggctcgcggag
ttgaagttgcagagcgtaccgatggtaaccggcggcaagggcgtgcacgtgatcgtaccg
ctgcaaaggcgcgcaacctggactgaggtgaaagccttttcgaagagctttgcaacggcg
tttgccgaggaggaacccgatcggttcgtcgcgaccatgtccaaggcgaagcgcaagggt
cgcatcttcatcgactggctgcgaaacgagcgggggtcaacggcgattgcaccctattcg
acacgttcgcgcgagggtgcaccggtggcgacgccggtttcctgggaagagttggcgggt
ctggaggaggccaactcgttccggctgcacgacatgcccgagcgtctggaagcgccagac
ccctgggcggacgcgacaggctggcgccagtctttgacaagggccatgctcaaggcattc
tcgggctga
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