KEGG   Trichophyton benhamiae: ARB_04898
Entry
ARB_04898         CDS       T01611                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
abe  Trichophyton benhamiae
Pathway
abe03030  DNA replication
abe03410  Base excision repair
abe03420  Nucleotide excision repair
abe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:abe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ARB_04898
   03410 Base excision repair
    ARB_04898
   03420 Nucleotide excision repair
    ARB_04898
   03430 Mismatch repair
    ARB_04898
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:abe03032]
    ARB_04898
   03400 DNA repair and recombination proteins [BR:abe03400]
    ARB_04898
Enzymes [BR:abe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ARB_04898
    6.5.1.6  DNA ligase (ATP or NAD+)
     ARB_04898
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     ARB_04898
DNA replication proteins [BR:abe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    ARB_04898
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     ARB_04898
DNA repair and recombination proteins [BR:abe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     ARB_04898
   NER (nucleotide excision repair)
    Other NER factors
     ARB_04898
   MMR (mismatch excision repair)
    Other MMR factors
     ARB_04898
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Presenilin
Other DBs
NCBI-GeneID: 9522091
NCBI-ProteinID: XP_003016609
UniProt: D4AKQ5
LinkDB
AA seq 909 aa
MAQKSGGSKQSTLGNPAPKKQSTLAFSSKSGGSNNYETKEKDDEVVEGAPQTPQKQVGRA
ESKRTPPPIDDGDVDGEILSGGEKSESVSPVTRRQKRKEAIATKGDEESDEQPVTKRRRR
SPKSNTKAKSPVNGGRSKAAATGEQSPTKIKSDAEPEQSSAEENSASEIEEDDIDDKPAK
VQQKKKAAAKQRKQVQSTLTSKPKDLYPDWKAGDPVPYAALCTTFSHIEMTTKRLIILSH
CALFLRQVLRLTPDDLLSTVQLMINKLAADYAGIELGIGESLIMKAIGESTGRSLAVIKA
DQNEIGDLGLVAAKSRSNQPTMFKPKALTVRGVHEGLLAIAKTHGTGSQEKKIAGIKKLL
SAADADKTGKGSKTIDITKNRGGASEAKFIVRFLEGKLRLGLAERTVLVALAHAMVAHEA
EMDGGKPPSTDQLAKGEDILKTVYRYAPLLNIVGVVTELTLCDSELPSYEVIVPAMLKHG
IFNLPDNCKLQPGVPLKPMLAKPTKSISEVLDRFEGKHFTCEYKYDGERAQIHYISQDTI
KEYPAASTTLQKDGEGLCAIFSRNSEDLSKKYPDILEKLEAWVKPGTQSFVVDCETVAWD
TVNKKVLPFQQLMTRKRKDVKSEDIKVKVCVFAFDLLFLNGEKNDTDYTQPTVKKTLRER
RALLHEAFVPVEGEFAFAQHGNTSDLEEIQTMLDESVKASCEGLMVKMLDTEDSGYEPSK
RSRNWLKVKKDYLAGIGDSLDLVVLGAYFGRGKRTSVYGAFLLAAYNPKTQNYETICNIG
TGFSEALLEELHETLSPLVIDKPKPFYSHSTVPKDQPDVWFEPKFVWEVKAADLTLSPRY
SAASDEVMGNTGGSAAKGISLRFPRYIKARDDKKPDQATTTKAVAEMYRKQESVAMDKTK
GAVDDDFEY
NT seq 2730 nt   +upstreamnt  +downstreamnt
atggctcaaaaatcaggtggctcgaaacagtcaaccctaggtaacccagcgccaaagaaa
caatctacccttgcgttttcatcaaagtcgggaggtagtaataattatgagaccaaggag
aaagacgatgaggtcgtggaaggggcccctcaaacaccccagaagcaagttggtcgtgcg
gagagcaagcgtactccaccaccaattgatgacggggatgtagatggggaaatattgtct
ggtggtgagaaaagcgagtctgtttctcctgtgactaggaggcaaaaacgaaaggaggcc
atcgcaaccaaaggtgacgaggagtcagatgagcagcccgtcacgaagcgccgaaggaga
tcaccaaaatccaataccaaagccaagagccctgttaacggtggtcgtagtaaggcggct
gctaccggtgagcaatcgccaactaagatcaaatcggatgctgaaccagagcaatcctcc
gccgaagagaattcagcttcggagattgaggaagatgatatagacgataagccggccaag
gtgcaacagaagaagaaggccgcggctaaacaacggaaacaagtccagagcactctcaca
tccaaacccaaagacctgtacccggattggaaggccggagaccccgttccctacgccgcg
ctttgcaccaccttctcacacatcgaaatgactacaaaacgccttattatattgtcacac
tgcgcgctcttcttgcgccaagtactccgtcttaccccggatgacttactttctaccgtc
cagttgatgataaataagttagctgctgattatgctggaattgaactcggaattggtgaa
tctctgatcatgaaagctattggtgaatcgaccggacgcagccttgcagtcatcaaagcc
gatcaaaatgaaattggcgatcttggacttgttgccgcaaagagtcgatcaaatcaacct
accatgtttaagcctaaagcgctgactgtacggggtgtacacgaagggttgttggccatt
gctaagacgcatggtaccgggtctcaggagaaaaagattgcgggcattaaaaaactactc
tctgctgctgatgctgacaagacggggaaggggtccaaaaccattgatattaccaaaaat
aggggcggtgctagtgaggccaaattcattgtacgatttttggaaggtaaacttcggctt
ggactggctgagaggactgttcttgtcgctttagcccatgcaatggtagcacacgaggct
gagatggacggagggaaacctccaagtacagatcagcttgccaagggcgaagacattctt
aaaactgtctataggtatgctccacttctgaacattgttggtgttgtaactgaattaaca
ttgtgtgatagtgaacttccatcatacgaagtgatcgttccggccatgcttaaacacgga
atcttcaatttgccagacaactgcaaattgcagcctggtgtcccattaaaacctatgctt
gctaaacctaccaaatccattagtgaagttcttgaccgctttgaagggaagcatttcaca
tgcgaatacaagtatgatggcgagagagcacagatccattacatctctcaggacacaatc
aaggaatacccagcggcttctacaacacttcaaaaagacggcgagggcctttgcgctatc
ttttctcgcaactctgaagacttatccaagaaataccctgatatactcgaaaaactggag
gcctgggtgaagcctggcacccagagttttgttgtggactgtgaaacagttgcttgggac
actgttaacaaaaaggtccttccctttcaacaactcatgactaggaagcgaaaggacgtg
aaatcggaagacatcaaggtcaaagtctgcgtttttgcatttgacttgctcttcctgaat
ggagagaagaatgatactgactatacacagcctaccgttaaaaagacgctgagggaacga
cgtgcccttttacatgaagcgtttgttccagttgagggagagtttgcttttgctcagcac
ggaaacactagtgacttggaagaaatacagaccatgcttgacgagagcgtcaaagcctcc
tgtgaaggcctcatggtgaagatgttggatacagaggacagtggctatgagccaagcaag
agaagtagaaactggctgaaggtcaagaaagactaccttgctggcattggtgattccctc
gatcttgtcgtcttgggcgcatatttcggtcggggcaaacgtacatcagtgtatggtgct
ttcctactcgctgcatataatcccaagactcagaactacgaaacaatctgcaatattggc
acaggtttctcagaagctttgctagaggaacttcatgaaaccctcagcccgcttgttatc
gataaaccaaagccgttttactctcactcaacagtccccaaggaccaaccggacgtctgg
tttgagcccaagttcgtatgggaagtcaaggctgctgatctcactctcagccccaggtat
agcgctgccagtgatgaagtgatgggcaacactggtggctccgcagctaagggtatctca
ctacgattcccccgatacatcaaggcgagagacgacaagaagccagaccaagctacgact
acaaaggctgttgcggagatgtatcgaaaacaggagagcgtagcaatggacaagaccaag
ggagccgtggacgatgattttgaatattga

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