Asaia bogorensis: Asbog_01140
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Entry
Asbog_01140 CDS
T04138
Symbol
mfd
Name
(GenBank) DNA helicase transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abg
Asaia bogorensis
Pathway
abg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Asbog_01140 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abg03400
]
Asbog_01140 (mfd)
Enzymes [BR:
abg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Asbog_01140 (mfd)
DNA repair and recombination proteins [BR:
abg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Asbog_01140 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
AAA_16
RecG_dom3_C
UB2H
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BAT19419
UniProt:
A0A0P0YFL7
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All DBs
Position
1256796..1260251
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AA seq
1151 aa
AA seq
DB search
MTDTPDRPTLWGVPEAYTAFLLRRRLSEHDGPLIHVARDDAAVAALADMLAYVEPGVSIL
RFPAWDCLPYDRVSPNPALTAERAATLTRLLEPAGATRRIVLTTVHALVQRVPPRDAFRN
QAISVKKGEALDQAMLIDLLVASGYTRTDTVMEAGEFATRGGIFDLFPAGESEPIRLDLF
GDEVDHIRRFDVSSQRSTDTLDAFNLRPVSEYALSPEAISRFRSAWRDLFGPSSASDVLY
ENVSEGRRFPGLEHYIPLFHEHMDTLVDYLPDASISMDHQVPDILSARLEMIADHFEARK
APAREGEAIYRALPSHLLYLNRSGWDAMLARVPSIALNPFAKPDTVQGMDAGGRPGPIFV
RGKDGTREGAFDALRTQLEAWEKAGRRCYVTAWTKGSRERIASLLKEHKFTTESHDSWAS
AAGISPGKVGLIVLGLERGFVADRMAFISEQDLLGERIARPPRRKRRAEQFITEASEIAE
GDLVVHADYGIGRYEGLETVSDGVAPHDCLRLLYDGAQKLFLPVENIELLSRFGSEQGGV
ALDKLGGQAWQARKAKMKQRIRDMAGELIRTAAGRAMKEAPSLIPAEGMWDEFCARFPFV
ETEDQSRAIADVLEDLTSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGVQVAVVVPTTL
LARQHFRSFSTRFEGFPVRIAQLSRLVTAKEAAETRRALEEGQVDIVVGTHALIAKSVNF
ANLGLLIIDEEQHFGVAHKERLKSMREDVHVLTLSATPLPRTLQLSLTGVREMSLIATPP
TDRLAVRTFITPFDSVMIREAIQRERFRGGQVFCVVPRIEDMDRMADRLRDIVPDAKTVQ
AHGRLTPAELERVMTEFSDGRYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQLR
GRVGRGKQRGYAYLTWPQSHRLSPASEKRLEIMQTLDTLGAGFTLASHDLDLRGAGNLLG
DEQSGHIKEVGIELYQQMLEDAVTTMRLQKDQKRAEDKDWTPNIILGLPVLIPETYVRDL
PVRLGLYRRIAGLEGEAELDAMRAELVDRFGSLPQEVENLLDVVVIKRLCSAAGVDRLEA
GPKGMVIQFRNRKFRNPMGLLKWVERHKDQGVKLRPDQKLAVVREMTNAQRITMARKVMG
ALKKLADKADA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatacccccgaccggccgaccctctggggcgtgccggaggcctatacggccttt
ctcctgcgtcgccgcctgagcgagcatgacggcccgcttatccatgtggcgcgcgacgat
gccgctgtcgccgcgctggctgacatgctggcctatgtcgagcccggcgtgagcatatta
cgcttccccgcctgggattgccttccctatgaccgtgtctcgcccaatccggccctgaca
gcggagcgtgccgctacgctgacgcgtctgctggaacccgcaggggcgacgcggcgcatc
gtgctgaccacggttcatgcccttgtccagcgcgtgccgccacgcgatgcgttccgcaac
caggccatttccgtgaagaagggcgaggccctcgatcaggccatgctgatcgatcttctg
gtggcgagcggctacacgcgcaccgatacggtgatggaggccggtgagtttgccacacgc
gggggcattttcgatctgttccccgccggcgagagcgagccaatacgcctcgatctgttc
ggcgatgaggtcgatcatatcaggcgctttgatgtgtcgagccagcgctcgaccgacaca
ctggacgctttcaacctccgccccgtctccgaatatgcgttgagccccgaggccataagc
cgcttccgctccgcctggcgcgatcttttcgggccatcctcagcttcggatgtgctgtac
gaaaacgtttccgagggaaggcgttttccgggcctcgaacactacattccgcttttccat
gagcatatggatacgctggtcgattatctgcccgatgcatcgatcagcatggaccatcag
gtgccggatattctctcggcccgtctggaaatgatcgccgatcacttcgaggccaggaag
gctcccgcgcgtgagggagaggccatctatcgggcattgccctcgcacctgctctatctc
aatcgttcgggctgggatgccatgttggcccgtgtgcccagcattgccctcaatcctttt
gccaagcccgatacggttcagggcatggatgccgggggcaggccggggcccattttcgtc
cgtggcaaggatggtacgcgtgaaggggctttcgatgccctgcggacacagcttgaggca
tgggagaaagccggacggcgctgctacgtgacggcatggaccaagggctctcgtgagcgc
attgcctcgctgctgaaggagcacaaatttaccaccgagtcccacgatagctgggcttcg
gcagcggggatctcgccgggaaaggtcgggctcattgtgctcgggcttgaacgtggcttt
gtggcggaccgcatggcgttcatctccgagcaggacctgctgggtgagcggatcgcccgt
ccgccccgtcgcaagcgccgggctgagcagtttattaccgaggcgtctgaaattgccgaa
ggtgatctggtcgtccacgctgattacggcatcgggcgctatgaggggctggaaacggtc
agtgatggcgtggccccgcatgattgcttgcgtctgctctatgacggggcgcagaagctt
ttcctgccggttgagaatatcgagcttctgagccgcttcggttcggagcagggcggtgtg
gcgctggacaagctgggcggtcaggcctggcaagcccgcaaggccaagatgaagcagcgc
attcgcgacatggcgggcgagctgatacgcaccgccgcgggtcgcgccatgaaggaagcg
ccgtcgctcatacctgccgaagggatgtgggacgagttctgtgcccgcttcccctttgtc
gagaccgaggaccagtcacgcgccattgccgatgtgctggaggacctgacctccgggcgc
cccatggaccgtctcgtctgtggcgatgtcggcttcggcaagacggaggtggccctgcgt
gcggctttcgtggcggcgttgtcgggtgtgcaggtggccgtggtcgttcccaccacgctg
ctggcgcgacagcatttccgcagtttctcgacccggttcgagggcttccctgtccgtatt
gcccagctgtcccgcctcgtgacagccaaggaggctgccgagacgcggcgtgcgctggaa
gaagggcaggtcgatattgtggtcggtacgcatgcgctgatcgccaaatcggtcaatttt
gccaatctgggcctgctgatcattgatgaggagcagcattttggcgtggcgcacaaggag
cgcctcaagtccatgcgcgaggatgtgcatgtgcttacactctccgccacgcccctcccg
cgcaccttgcagctctcgctaacaggcgtgcgcgagatgagcctcattgccacgccgcca
acggaccggcttgccgtacggaccttcatcacaccgtttgacagtgtgatgatccgcgag
gcgatccagcgtgagcgttttcgtggcgggcaggttttctgcgtcgtgccgcgtatcgag
gatatggaccgcatggcggaccgcctgcgtgacatcgtgcccgatgccaaaaccgttcag
gcgcatggtcgtctgaccccggcagaactcgagcgcgtcatgacggaattttccgacggg
cgctacgatatcctgctctccaccaatattgtggaaagcggtctggacatgcctgcggtg
aatacgctgatcatccatcgcgccgacatgttcggcctgggtcagctctaccagcttcgc
gggcgcgtggggcgcggcaagcagcgcggctatgcctatctcacctggccgcagagccat
cgtctttctccggcttccgaaaagcgtctcgaaatcatgcagacgctcgacacgctcggg
gcgggattcaccctggcgtctcatgacctggatctgcgcggcgcggggaatctgctgggt
gatgagcagtcgggtcatatcaaggaggtcgggatcgagctctaccagcagatgctggaa
gatgccgtcaccaccatgcgcctgcagaaggatcagaaacgcgctgaggacaaggactgg
acgcccaacatcattctgggtttgcccgtgcttatccccgaaacctatgtgcgcgatctt
cctgttcggctgggcctttaccgccgtatcgccgggttggaaggcgaagcggagctcgac
gcaatgcgcgccgagctggtcgatcgttttggttcgctgccgcaggaagtggagaacctg
cttgatgtggttgtcatcaagcgtctgtgcagtgcggctggcgtggatcggcttgaggcc
ggccccaagggcatggtcatccagttccgtaaccggaagttccgcaacccgatggggctg
ctgaaatgggtggaacgacacaaggatcagggcgtgaagctgcgtcccgaccagaagctt
gctgtcgtgcgcgaaatgaccaacgcgcagagaattaccatggcccgcaaggtaatgggg
gcgttgaagaagctggctgacaaggctgacgcctga
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