Akkermansia biwaensis: Abiwalacus_03580
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Entry
Abiwalacus_03580 CDS
T08790
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abiw
Akkermansia biwaensis
Pathway
abiw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abiw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Abiwalacus_03580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abiw03400
]
Abiwalacus_03580
Enzymes [BR:
abiw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Abiwalacus_03580
DNA repair and recombination proteins [BR:
abiw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Abiwalacus_03580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
BDL42784
LinkDB
All DBs
Position
451829..455005
Genome browser
AA seq
1058 aa
AA seq
DB search
MAEDASISSLLDRVARTAPFRRELAKLGTEEQAVFDHTALPGVPFVAALCINSVPETCRT
WVVTPHLRAQESVASQLETWGVHNILFVPEKEVALGEEVGDPELTAERLNVLHRIASGQI
GRLTVVLTENSLNDEVPSTRGMKNQGMILKAGETRPPDELEKLFTEAGFEGVPQVISRGQ
WSRRGGILDVFPLQSANPVRLEFFDDEIESIREFDVDTQVSFRKVEHVNLVLQEAASVET
LRDWIRPGDLVITTPFCKERGHVCILAAPPEDAEGEEDFSLAIHDNPLGSFDAGDFVMQE
MRRELAERQIREWLDRKWNVSMFFPNQAEEERFKDICAGTPALLSITCLRGDLPGGFSIP
EAKTAVLSSSELFGRYQSATARRRASREDKARKARAQASLKDINPGDLVVHTSYGIGKFI
NISTSPDSGDEEMNILYRDNTILHVPLSQAHLVSRYIGLGSRTPELNKLGDSKWQRAKKS
AERSVADYAAQLLNVQAERQTGKGYSHPPDSKWMWEFESSFPFRETPDQLRAIAQTKADM
ESSRPMDRLICGDVGFGKTEVAIRAAFKCVTGGRQAAVLVPTTVLAEQHFRTFKSRMSEY
PVRIEMLSRLNSAAEVKSTLEGLKNGSVDIVIGTHRLISEDVSIKNLGLVVIDEEQRFGV
KHKEKFKERFKGIDVLTLSATPIPRTLYIALMGARDMSSIDTPPVNRQPVQTSVCPYDER
IMKKAMERELERGGQIFLLHNRVKTIELFRDRIQALVPKARIVIGHGQMPKDELEKVMSS
FVRGEADILLATTIIESGIDIPNANTIIIDRADRFGLADLYQLRGRVGRSGHRAYAYLML
PRTSSTTEDARKRVSAIKQYTELGSGFKIAMRDLEIRGAGNLLGTQQSGHIAAIGFDLYC
QLLQQSISHMQGKHSAPRADAALRADFIVNSETQFAAKSRKEYLGAFIPRDYISDAPLRI
AAYKDLAGARTIKETDALLRTWEDRFGPAPETVHHLLAAHKIKILATMANISMVEVSGQR
LMLTRNGDFILLSNKFPRLAGITPAEKLQETLEMLKKI
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagacgcttccatatcctccctgctggaccgggtggcccgcaccgcccccttc
cgcagggaactggcgaagctgggcacggaggaacaggccgttttcgaccacaccgcgttg
cccggcgtaccgtttgtggcggccctgtgcatcaacagcgttccggaaacgtgccgcacc
tgggtggtgactccccatctgcgagcccaggaatccgtagcctcccagctggagacatgg
ggcgtgcacaacatcctgttcgtcccggaaaaggaagtggcgctgggcgaagaagtggga
gacccggaactcaccgcggaacggctgaacgtgctgcaccgcattgcctccggacagata
ggcaggctgaccgtcgttctgacggaaaattccctgaatgacgaggttccctccaccagg
ggcatgaagaaccagggcatgatcctgaaggcgggggaaacgcggccgccggacgaactg
gaaaagttgttcacggaagccggattcgagggcgttcctcaggtcatttcccgcgggcag
tggtcccgccgcggcggcattctggacgttttccccctgcaatccgccaatcccgtacgt
ctggaattctttgacgatgaaatcgaatccatccgggaattcgacgtggatacccaggtc
tccttccggaaggtggagcacgtcaacctcgtcctgcaggaggcggcatccgtggaaacc
ctgcgcgactggatcaggccgggagacctggtcatcaccacccccttctgcaaggaacgc
gggcacgtgtgcatcctggccgcccctccggaagatgcggagggagaggaggatttttcc
ctggccatccatgacaatcccctgggcagctttgacgcgggcgacttcgtgatgcaggaa
atgcgccgcgaactggccgaacgccagatacgggaatggctggaccggaaatggaacgtc
agcatgtttttcccgaaccaggcggaagaagagcggttcaaggacatttgcgccggcacc
ccggccctgctctccatcacctgcctgcggggggacctgcccggcggtttcagcattccc
gaagcgaagacggcagtcctctcctcctccgagctgttcggcaggtaccagtccgccacg
gcgcggcggcgcgccagccgggaagacaaggcgcgcaaggcacgcgcccaagcctccctg
aaagacatcaatccgggggacctggtggtccacaccagctacggcatcgggaagttcatc
aacatctccacctctccggattccggagacgaggaaatgaacatcctctaccgggacaac
accatcctgcacgtccccctcagccaggcgcacctggtttcccgctacatcggcctgggc
agcaggacgccggaactcaacaaactgggggattccaaatggcagcgcgccaaaaaatcc
gcggaacgctccgtggcggactacgccgcccagctcttgaacgtgcaggcggaacgccag
acgggcaaaggctacagccacccgccggacagcaaatggatgtgggagtttgaaagctcc
ttcccgttccgtgaaacgcccgaccagctccgtgccatcgcccagacgaaggcggacatg
gaatcctcccggcccatggaccgcctgatctgcggagacgtgggcttcggcaagacggag
gtagccatccgcgccgcattcaaatgcgtgaccggcggccgccaggcggccgtgctggtg
cccactaccgtactggcggagcagcacttccgcaccttcaagtcacgcatgagcgaatat
cccgtgcgtattgaaatgctgagccgcctcaacagcgcggcggaagtcaaatccacgctg
gaagggttgaaaaacggctccgtggacatcgtcatcggtacccaccgcctcatttccgaa
gacgtttccatcaagaacctgggcctggtggtcattgacgaggaacaacgcttcggcgtc
aagcacaaggaaaaattcaaggagcgcttcaagggaatagacgtgctcaccctgtcggcc
acccccattccccgcacgctgtacattgccctgatgggcgccagggacatgagttccatc
gatacgccgcccgtcaacaggcagccggtgcagaccagcgtctgcccctatgacgaacgc
atcatgaaaaaggccatggagcgcgaattggagcgcgggggccagatattcctgctgcac
aaccgcgtcaagaccatcgagctgttccgggacaggatacaggccctggtccccaaggcg
cgcatcgtcatcggccacggacaaatgcccaaggacgagctggaaaaggtcatgagctcc
ttcgtgcggggagaggcggacattctgctggccaccaccatcattgaatcgggcatagac
attcccaacgccaacaccatcattattgacagggcggaccgcttcggcctggcggacttg
taccagctccgcggccgcgtgggccgctcagggcaccgcgcgtacgcctacctcatgctg
cccaggacctcctccactacggaagacgcccgcaagcgcgtctccgccatcaaacagtac
acggaactgggttctggattcaaaatagccatgcgcgacctggaaatccgcggagcgggc
aacctgctcggcacccagcagagcggccacatcgccgccatcggctttgacctgtactgc
cagcttctccagcagtccatctcccacatgcagggcaaacattccgcacccagggcggac
gccgccctccgggcggatttcatcgtgaacagtgaaacgcagtttgcggccaaatcccgc
aaggagtacctgggcgccttcattccgcgggactatatcagcgacgccccgctgcgcatc
gccgcctacaaggatttggcgggagcccgcaccatcaaggagacggacgccctgctccgc
acctgggaagaccgattcggacctgcaccggaaacggtgcatcatctgcttgccgcgcac
aaaatcaagatactggccaccatggccaatatatccatggtggaagtcagcggccagcgc
ctgatgcttacccggaacggggatttcatcctcctgtccaacaaatttccgcgcctggcg
ggaatcaccccggcggaaaagcttcaggaaaccctggaaatgcttaaaaagatctaa
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