Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT51454
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Entry
AGABI1DRAFT51454 CDS
T03136
Symbol
AGABI1DRAFT_51454
Name
(RefSeq) hypothetical protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03030
DNA replication
abp03410
Base excision repair
abp03420
Nucleotide excision repair
abp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
03410 Base excision repair
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
03420 Nucleotide excision repair
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
03430 Mismatch repair
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abp03032
]
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
03400 DNA repair and recombination proteins [BR:
abp03400
]
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
Enzymes [BR:
abp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
6.5.1.6 DNA ligase (ATP or NAD+)
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
DNA replication proteins [BR:
abp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
DNA repair and recombination proteins [BR:
abp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
NER (nucleotide excision repair)
Other NER factors
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
MMR (mismatch excision repair)
Other MMR factors
AGABI1DRAFT51454 (AGABI1DRAFT_51454)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DUF4746
Motif
Other DBs
NCBI-GeneID:
18829957
NCBI-ProteinID:
XP_007325045
JGI:
Agabi_varbur_1_51454
UniProt:
K5XK36
LinkDB
All DBs
Position
Unknown
AA seq
822 aa
AA seq
DB search
MGRQQTLGKFFEMPKGLKNAPPQQSSLLDMWSKGKRKAVSGPKKEEADEDIVPENNKMDV
NKPGESSSQSEITKIGPPSKRRRIVTSDDDEPSSSVRRTINSPTVGTSPPVSRTSSPQSS
PPPKSRKARIPVRAAVSEAESEAAATSEPSDDDGEEEIERDEQEDNDESIMAVEGAALLR
IKEVDIPGGWKVGQPVPYAALAKTFSLIESTTKRLEKNSYLTSFLLLVIQRSAKGDWNSL
LQTVYLCINRLSPDYEGIELGIGESLLIKAIAESTGRSLAVIKADLKREGDLGLVAMNSK
TSQKTLFKPKPLTLPFVFSHLKDIATTSGHSSQAKKVSIITKLLAACQGLEAKYIIRSLE
GKLRIGNAERSVLVAIANAVVLAEKEASNKNWSNEKLIKRLEESTLRIKSVYSELPSYDK
VIPALLNVGIDGLEEVCKLTPGVPLKPMLAKPTKAIGEVLDRFENQHFTCEYKYDGERAQ
VHKLEDGSVAVFSRNSEDMSKKYPDLVEQLPKCIKETTKSFVLDAEAVAIDRKTGKLMPF
QELSRRKRKDVKVEDIQVRVCLFAFDLLYLNGEPLLRKPLSERRKLLLEHFQPIDGEFNF
AKASNSQSVEEIQAFLEESVKDGCEGLMVKMLDGEPSFYEPSRRSVNWLKLKKDYLAGVG
DSLDLVVVGGYYGKGKRTNVYGAFLLACFDPDSEEYQTICKIGTGFSDEILQSHYNELKP
LELEKARGDVNIGGAKPDIWFEPKIVWEVLTADLSLSPIYTAAHGTVDERGISLRFPRFI
RVRDDKHVEDATASEQVAEMYGRQALANRDGKKKGGDDDGFW
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtcagcaaacattgggtaaattctttgaaatgccaaagggtttgaagaatgcc
cctccccagcagtcaagcctgctagacatgtggagcaagggaaagcggaaggctgtcagt
ggacctaagaaggaagaggcggacgaggatatagtgcccgagaacaataaaatggatgta
aataaaccaggcgaaagctcctcgcagagtgaaataaccaaaattggcccaccgtcaaaa
aggcgcagaatagtcacctcggacgacgatgaaccatcttcaagtgttcggcgaactatc
aactctccaactgttgggacctctcctcccgtttccaggacatcttcaccccaatcctca
ccacctccgaaatccagaaaagcgagaatacccgttcgagcagctgtctcggaggctgag
tcggaagcggccgcaacgtccgagccaagtgacgatgatggtgaagaagaaattgagagg
gatgaacaagaagataatgatgagagcattatggctgtagaaggagctgcccttttacga
atcaaagaagttgacatacccggaggatggaaagttgggcagcccgttccttacgcagct
ctggcgaaaacattttccctcatagaaagcaccacaaagcgtttagaaaagaattcatac
cttacatcatttctgttactagtcatacaacgcagcgcaaagggcgattggaattcgctc
cttcaaacagtttacctctgcatcaatcggttatcaccagactatgaaggcattgagctt
ggcattggcgaaagtttgttgataaaagcgatcgcagaatcaactggtcgaagtttggcg
gtgattaaagcagacttgaaacgagaaggtgatttgggacttgtcgcaatgaattcgaaa
actagccagaaaactctttttaaacccaagccactaacccttcctttcgtattctctcat
ctcaaagacattgctactacgagtgggcactcctctcaagcaaagaaggtttcaatcatc
accaaacttctcgcggcatgtcaaggcttggaggccaaatacattatccgtagtctggaa
ggcaaactacgcatcggcaatgccgagcgatcggttctagtcgccattgcgaatgctgtt
gtcctggcagaaaaagaggcatccaacaaaaattggtcaaatgagaagttaatcaaacga
ctggaagaatccactctcagaatcaagtcggtttatagtgaattgccaagctatgacaag
gtcatccctgctcttctcaacgtcggtattgatggtctggaggaagtgtgcaaattgaca
ccaggtgtccctttaaaacctatgctagcgaaacctaccaaggcaattggcgaagtcctt
gatagattcgaaaaccaacatttcacttgcgagtacaaatacgatggagagcgtgcccaa
gtacataaattagaagacggtagtgtcgcggtcttcagtcgaaattctgaagatatgagt
aagaaatatcccgatctcgtggaacaattgcccaagtgcatcaaagaaacgactaaatca
ttcgtgctcgatgcggaggctgttgcaatagaccggaaaacggggaagcttatgcccttc
caggagctaagtcgacggaaacgcaaggacgtcaaagtagaggatatccaagttcgagtg
tgtttgttcgcctttgatttattataccttaatggcgagcccctgctacgcaaacctttg
tcagagaggaggaaacttttacttgaacatttccaacctattgacggagagttcaacttt
gccaaggcgtcgaatagtcaatcagttgaagagatccaagctttccttgaggagagtgtg
aaggacggttgtgaagggttgatggtgaagatgttggatggcgagcctagcttttatgag
cccagtcggcgtagtgtcaactggttgaagctcaaaaaggattatctggccggtgttggg
gattctttggatttggtcgtggttggtggttactatggcaaaggaaaacgaacaaacgtc
tatggagcctttctccttgcgtgttttgacccagactcggaagaataccaaaccatctgc
aagattggaaccgggttcagtgatgagatcctccaatcacattacaacgaactcaaaccg
ctcgaattagaaaaggctcgtggagatgtcaacatcggaggagctaaacccgacatctgg
tttgaaccaaaaattgtgtgggaagtactcactgcggacttgagcttgagtcctatttat
actgccgctcacggaacggtggacgaacgaggcatttcgctgcgatttcctcgctttatc
agagtgcgagatgacaagcatgttgaggatgcaacagcatctgaacaggttgctgagatg
tatgggcgacaagctctcgcgaatagagacgggaagaagaaagggggtgacgacgacgga
ttttggtga
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integrated database retrieval system
