KEGG   Azospirillum brasilense Az39: ABAZ39_19475
Entry
ABAZ39_19475      CDS       T03288                                 
Name
(GenBank) RNAse R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
abq  Azospirillum brasilense Az39
Pathway
abq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:abq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABAZ39_19475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abq03019]
    ABAZ39_19475
   03016 Transfer RNA biogenesis [BR:abq03016]
    ABAZ39_19475
Enzymes [BR:abq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     ABAZ39_19475
Messenger RNA biogenesis [BR:abq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ABAZ39_19475
Transfer RNA biogenesis [BR:abq03016]
 Prokaryotic type
  tRNA degradation factors
   ABAZ39_19475
SSDB
Motif
Pfam: RNB CSD2 S1 HTH_12 RNase_II_C_S1 FaeA
Other DBs
NCBI-ProteinID: AIB14109
UniProt: A0A060DT18
LinkDB
Position
AbAZ39_p1:1073468..1075753
AA seq 761 aa
MTDTSRRSGSFPDKDTVLSFIRDSATPVGKREIARAFKLSGSDDRERLKALLKELEADGA
VERGRNKRVAPPQSLPEVAVLEVTGTDADGEVTARPVTWTGEGNPPRIFLMPERKGHPTL
GTGDRVLAKLSRINDRLYEARTIRRLDGTVGRVLGVYYPAADGGRIVPTDKRNKTELLVL
PANRNDAEPGELVLADLLPASRMGLPQARVAERLGHTAEPRAVSLIAVHTHGLPTDFPPA
ALREASHAAVPSLTGRTDLRDLPLVTIDGADARDFDDAVWAEPDPDPANEGGWHLLVAIA
DVAFYVRPNSALDRAAYERGNSVYFPDRVVPMLPEALSNDLCSLRPHEDRACVAAHLWID
RHGALLRHRFVRGLMRSAARLTYEQVQAARDGAPDEATAPLLETVIAPLYGAYARLWAAR
QRRGTLELELPERRVRLDERGRVAEIAPRERLDSHRLIEEFMICANVAAADSLERAGMPG
LFRVHDQPSLDKQETLREFLTGIGYTLPRVPRLKPAHFTAILDRAAGTADSQLVSEVILR
SQSQAEYSPENIGHFGLSLDRYAHFTSPIRRYADLIVHRALIRVHGLGPGGLDDAAMAGL
TDIGEHISMTERRAATAERDAIDRFTAAFLADRVGALFTGRISGVTRFGLFIRLDENGAD
GLIPASTLPDDQYEHDERAHALVGQRTGRRYRLGAAVTVVLMEADPLTGSTLFALPRAEG
DLTGISVGGTDHPLQSGNPDRPTGNARFAGHATQKQRKRGR
NT seq 2286 nt   +upstreamnt  +downstreamnt
ttgaccgacacctcccgccgctccggcagctttcccgataaggacaccgtcctctccttc
atccgcgacagcgcgactccggtcggcaagcgcgagatcgcgcgcgctttcaagctgtcg
ggcagcgacgaccgcgagaggctgaaggcgctgctgaaggagttggaggccgacggcgcc
gtggaacgcgggcgcaacaagcgcgtcgccccgccgcagtcgctgccggaggtcgccgtg
ctggaggtgaccggcaccgatgcggacggcgaggtcaccgcacgcccggtcacctggacc
ggcgagggcaacccgccgcgcatcttcctgatgccggagaggaagggccaccccacgctg
gggaccggcgaccgggtgctggcgaagctcagccgcatcaacgaccggctgtacgaggcc
cgcaccatccgccggctcgacggcacagtggggcgcgtcctcggcgtctattaccccgcg
gcggacggcgggcgcatcgtccccaccgacaagcgcaacaagaccgaactgctggtcctg
ccggccaaccgcaacgacgccgagccgggcgagttggtgctggccgacctgctgccggcc
tcccggatgggcctgccgcaggcccgcgtcgccgagcggctgggccatacggcggagccg
cgcgccgtcagcctgatcgccgtccacacccatgggctgcccaccgacttcccgcccgcc
gccctgcgcgaggcgtcgcacgccgccgtgccctccctgaccggacggaccgacctgcgc
gacctgccgctggtgaccatcgacggcgccgacgcccgcgatttcgacgacgcggtgtgg
gcggagccggaccccgacccggcgaacgaaggcggctggcacctgttggtcgccatcgcc
gacgtggccttctacgtccgccccaattcggcgctggaccgggcggcatacgagcgcggc
aactccgtctatttccccgaccgcgtcgtgccgatgctgccggaggcgctgtccaacgac
ctctgctcgctccgcccccatgaggaccgcgcctgcgtcgcggcgcatctgtggatcgac
cgccacggcgcgctgctgcggcaccgcttcgtgcgcggactgatgcgctccgccgcgcgc
ctgacctacgagcaggtgcaggcggcccgcgacggcgccccggacgaggcgacggcaccg
ctgctagagacggtcatcgccccgctctacggcgcctacgcccgcctgtgggcggcccgg
cagcgccgcggcacgctggagctggagctgccggaacggcgcgtgcggctggacgagcgc
gggcgggtggcggagatcgcgccgcgcgagcgcctcgacagccaccggctgatcgaagaa
ttcatgatctgcgccaacgtcgcggcagcggacagcctggagcgggcgggcatgcccggc
ctgttccgcgtgcacgaccagccatcgctcgacaagcaggagacactgcgcgagttcctg
accggtatcggctacacgctgccgcgggtgccccggctgaaaccggcccatttcaccgca
atcctcgaccgcgccgccggaacggcggactcgcagctggtcagcgaggtcatcctgcgc
agccagtcgcaggcggaatacagcccggagaacatcggccatttcggcctgtcgctggac
cgctacgcccacttcacctcgccgatccgccgctacgccgacctgatcgtccatcgggcg
ctgatccgcgtgcacgggctggggccgggcgggctggacgacgcggccatggccggactg
accgacatcggcgagcacatttcgatgaccgaacgccgcgccgccacggccgagcgcgat
gccatcgaccgtttcaccgccgccttcctggccgaccgcgtgggtgccctgttcaccgga
cggatttccggggtcacccgcttcggcctgttcatccggctggacgagaacggcgccgac
gggctgatccccgccagcaccctgcccgacgatcagtacgagcatgacgagcgcgcccac
gccctggtcggccagcgcaccggccgccgctaccggctgggcgccgcggtgacggtggtg
ctgatggaggccgacccgctgaccggcagcaccctgttcgccctgccccgcgccgagggt
gacttgaccggaatttctgttggcggaaccgatcatccgttgcaatccggcaaccccgat
cgccccacgggaaacgcccgtttcgcgggccacgcaacccagaagcaacggaagcgtggc
cgctga

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