Azospirillum brasilense Az39: ABAZ39_19475
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Entry
ABAZ39_19475 CDS
T03288
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
abq
Azospirillum brasilense Az39
Pathway
abq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABAZ39_19475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abq03019
]
ABAZ39_19475
03016 Transfer RNA biogenesis [BR:
abq03016
]
ABAZ39_19475
Enzymes [BR:
abq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ABAZ39_19475
Messenger RNA biogenesis [BR:
abq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABAZ39_19475
Transfer RNA biogenesis [BR:
abq03016
]
Prokaryotic type
tRNA degradation factors
ABAZ39_19475
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
HTH_12
RNase_II_C_S1
FaeA
Motif
Other DBs
NCBI-ProteinID:
AIB14109
UniProt:
A0A060DT18
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All DBs
Position
AbAZ39_p1:1073468..1075753
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AA seq
761 aa
AA seq
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MTDTSRRSGSFPDKDTVLSFIRDSATPVGKREIARAFKLSGSDDRERLKALLKELEADGA
VERGRNKRVAPPQSLPEVAVLEVTGTDADGEVTARPVTWTGEGNPPRIFLMPERKGHPTL
GTGDRVLAKLSRINDRLYEARTIRRLDGTVGRVLGVYYPAADGGRIVPTDKRNKTELLVL
PANRNDAEPGELVLADLLPASRMGLPQARVAERLGHTAEPRAVSLIAVHTHGLPTDFPPA
ALREASHAAVPSLTGRTDLRDLPLVTIDGADARDFDDAVWAEPDPDPANEGGWHLLVAIA
DVAFYVRPNSALDRAAYERGNSVYFPDRVVPMLPEALSNDLCSLRPHEDRACVAAHLWID
RHGALLRHRFVRGLMRSAARLTYEQVQAARDGAPDEATAPLLETVIAPLYGAYARLWAAR
QRRGTLELELPERRVRLDERGRVAEIAPRERLDSHRLIEEFMICANVAAADSLERAGMPG
LFRVHDQPSLDKQETLREFLTGIGYTLPRVPRLKPAHFTAILDRAAGTADSQLVSEVILR
SQSQAEYSPENIGHFGLSLDRYAHFTSPIRRYADLIVHRALIRVHGLGPGGLDDAAMAGL
TDIGEHISMTERRAATAERDAIDRFTAAFLADRVGALFTGRISGVTRFGLFIRLDENGAD
GLIPASTLPDDQYEHDERAHALVGQRTGRRYRLGAAVTVVLMEADPLTGSTLFALPRAEG
DLTGISVGGTDHPLQSGNPDRPTGNARFAGHATQKQRKRGR
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgacacctcccgccgctccggcagctttcccgataaggacaccgtcctctccttc
atccgcgacagcgcgactccggtcggcaagcgcgagatcgcgcgcgctttcaagctgtcg
ggcagcgacgaccgcgagaggctgaaggcgctgctgaaggagttggaggccgacggcgcc
gtggaacgcgggcgcaacaagcgcgtcgccccgccgcagtcgctgccggaggtcgccgtg
ctggaggtgaccggcaccgatgcggacggcgaggtcaccgcacgcccggtcacctggacc
ggcgagggcaacccgccgcgcatcttcctgatgccggagaggaagggccaccccacgctg
gggaccggcgaccgggtgctggcgaagctcagccgcatcaacgaccggctgtacgaggcc
cgcaccatccgccggctcgacggcacagtggggcgcgtcctcggcgtctattaccccgcg
gcggacggcgggcgcatcgtccccaccgacaagcgcaacaagaccgaactgctggtcctg
ccggccaaccgcaacgacgccgagccgggcgagttggtgctggccgacctgctgccggcc
tcccggatgggcctgccgcaggcccgcgtcgccgagcggctgggccatacggcggagccg
cgcgccgtcagcctgatcgccgtccacacccatgggctgcccaccgacttcccgcccgcc
gccctgcgcgaggcgtcgcacgccgccgtgccctccctgaccggacggaccgacctgcgc
gacctgccgctggtgaccatcgacggcgccgacgcccgcgatttcgacgacgcggtgtgg
gcggagccggaccccgacccggcgaacgaaggcggctggcacctgttggtcgccatcgcc
gacgtggccttctacgtccgccccaattcggcgctggaccgggcggcatacgagcgcggc
aactccgtctatttccccgaccgcgtcgtgccgatgctgccggaggcgctgtccaacgac
ctctgctcgctccgcccccatgaggaccgcgcctgcgtcgcggcgcatctgtggatcgac
cgccacggcgcgctgctgcggcaccgcttcgtgcgcggactgatgcgctccgccgcgcgc
ctgacctacgagcaggtgcaggcggcccgcgacggcgccccggacgaggcgacggcaccg
ctgctagagacggtcatcgccccgctctacggcgcctacgcccgcctgtgggcggcccgg
cagcgccgcggcacgctggagctggagctgccggaacggcgcgtgcggctggacgagcgc
gggcgggtggcggagatcgcgccgcgcgagcgcctcgacagccaccggctgatcgaagaa
ttcatgatctgcgccaacgtcgcggcagcggacagcctggagcgggcgggcatgcccggc
ctgttccgcgtgcacgaccagccatcgctcgacaagcaggagacactgcgcgagttcctg
accggtatcggctacacgctgccgcgggtgccccggctgaaaccggcccatttcaccgca
atcctcgaccgcgccgccggaacggcggactcgcagctggtcagcgaggtcatcctgcgc
agccagtcgcaggcggaatacagcccggagaacatcggccatttcggcctgtcgctggac
cgctacgcccacttcacctcgccgatccgccgctacgccgacctgatcgtccatcgggcg
ctgatccgcgtgcacgggctggggccgggcgggctggacgacgcggccatggccggactg
accgacatcggcgagcacatttcgatgaccgaacgccgcgccgccacggccgagcgcgat
gccatcgaccgtttcaccgccgccttcctggccgaccgcgtgggtgccctgttcaccgga
cggatttccggggtcacccgcttcggcctgttcatccggctggacgagaacggcgccgac
gggctgatccccgccagcaccctgcccgacgatcagtacgagcatgacgagcgcgcccac
gccctggtcggccagcgcaccggccgccgctaccggctgggcgccgcggtgacggtggtg
ctgatggaggccgacccgctgaccggcagcaccctgttcgccctgccccgcgccgagggt
gacttgaccggaatttctgttggcggaaccgatcatccgttgcaatccggcaaccccgat
cgccccacgggaaacgcccgtttcgcgggccacgcaacccagaagcaacggaagcgtggc
cgctga
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