Aromatoleum bremense: pbN1_40480
Help
Entry
pbN1_40480 CDS
T07149
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abre
Aromatoleum bremense
Pathway
abre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
pbN1_40480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abre03400
]
pbN1_40480 (mfd)
Enzymes [BR:
abre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
pbN1_40480 (mfd)
DNA repair and recombination proteins [BR:
abre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
pbN1_40480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
AAA_16
AAA_30
Glyco_tran_WecG
ERCC3_RAD25_C
DUF4217
AAA_22
DUF3638
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
QTQ34031
LinkDB
All DBs
Position
4202729..4206187
Genome browser
AA seq
1152 aa
AA seq
DB search
MSRPLDPLLPQLTALSLPKPGMRLDLPALAGSSDALAIAQLATRGPCLLLVTANPLDAQR
LQDEIAWFAPALRTHLLPDWETLPYDSFSPHQDLISERLSTLYAVSRGEADVVLVPASTA
LYRMAPPAFLAAYTFFLKQGAKLDVDQLRTQMAVAGYTHVTQVVSPGEFSVRGGLIDLFP
MGAPLPFRIDLFDDEVESIKTFDPDTQRTVYPVPEIRMLPAREFPMDDAGRTRFRSRFRE
AFEGDPSRVSLYKDVSNGIAPAGIEYYLPLFFDETATLFDYLPADAAIVLHRDVPAAIDE
FWRDTRSRHDFLKGDRTRPVLPPEALFLGQESFFAALKDRPRIQISAEAAREVSPAATPL
PDVSVERKATDPLHRLKDLLVGDWARGGGRVLVLADAPGRRETISEFFGEYGLRPAASAD
FAGFLISGEPLALGVGPLANGFLLPGAKIAIVTESELYATTGRTRVRRDARKAATMEGWL
RDLSELKPGDPVVHVSHGIGRYLGLIHMDLGEGETEFLHLEYANGDKLYVPVSQLHVITR
YAGADPEAVDLHRLGSGQWEKAKKKAALQVRDTAAELLALYAQRAARPGHRFDFKQHDLD
AFAEGFGFETTPDQQAAIDAVVADMKSGQPMDRLVCGDVGFGKTEVALRAAFVAVADGKQ
VVVLTPTTLLAEQHYQTFADRFADFAIRIAELSRFKSAKEQADALKQLAEGKVDIIIGTH
RLLQKDVKFKRLGLVIIDEEHRFGVRQKEMLKQLRSEIDILTLTATPIPRTLGLALEGLR
EFSVIATAPQKRLAIKTFVHRHSKGIIREAVLREFKRGGQVYFLHNEVDTIDNVRDDLAE
LLPEARIVIGHGQLPERELERVMRTFTQQRANLLLCTTIIETGIDIPTANTIIINRADRF
GLAQLHQLRGRVGRSHHQAYAYLLTDAHAKPTALAQKRLEAITMMEDLGSGFYLAMHDLE
IRGAGEVLGENQSGEIQQVGFSLYTEMLKRAVRDLQAGKEPDLTQPLDVVSEINLHTPAL
LPNDYCPDVQERLTLYKRLANCESDGDLRNLQEELIDRFGELPPQTQALIETHRLRLLVK
PFGVAKLDASDAQISVQFDSDAPIDPAKVIFLIQKDRNTKMSGPDRLIRKASLPNLKQRV
QGVKELLEAVKA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgaccgctcgaccccctgctgccccagctcacggcgctttcccttccgaagccc
ggcatgcggctcgatctgcccgcgctcgccggttcgtccgacgcgctggcgatcgcccaa
ctcgcgacgcgcggcccctgcctgctgctggtgaccgcgaacccgctcgacgcccagcgc
ctgcaggacgagatcgcatggttcgcgcccgcgctgcgcacgcacctgctgccggactgg
gaaacgctgccctacgacagcttctcaccgcaccaggacctgatctcggaacgcctgtcg
acgctctacgcggtgagccgcggcgaggccgacgtcgtgctcgtgcccgcttcgaccgcg
ctgtaccgcatggccccgccggcctttctcgccgcctacaccttcttcctgaagcagggt
gcgaagctcgatgtcgaccagttgcgcacccagatggcggtcgccggctacacgcacgtg
acgcaggtcgtcagcccgggcgagttctcggtgcgcggcgggctgatcgacctgttcccg
atgggcgcgccgctgccgtttcgcatcgacctcttcgacgacgaggtcgagagcatcaag
accttcgacccggacacgcagcgcaccgtctacccggtgccggagatccgcatgctcccg
gcgcgcgaattcccgatggacgacgccggccgcacgcgctttcgcagccgcttccgcgaa
gcgttcgaaggcgacccgtcgcgcgtgtcgctgtacaaggatgtgtcgaacggcatcgca
ccggccggtatcgagtactacctgccgctgttcttcgacgagacggcgacgctgttcgac
tacctgccagccgacgcggcaatcgtgctgcaccgcgatgtgccggccgcgatcgacgaa
ttctggcgtgacacccgctcgcgccacgatttcctcaaaggcgaccgcacccgcccggtg
ctgccgcccgaggcgttgttcctcggccaggaaagcttcttcgctgcgctgaaggaccgc
ccgcggatccagatttcagccgaagccgcccgcgaggtgtcaccggccgccactcccctc
cccgacgtttccgtcgaacgcaaggcgaccgatccactgcatcgcctgaaggatctcctc
gtgggcgactgggcgcgcggcggcggccgcgtcctcgtgctcgccgacgcaccgggacgg
cgcgagacgatttccgagttcttcggcgaatacggcctccggccggcagccagcgcggat
ttcgccggcttcctcatatccggcgagccgctcgcgcttggcgtcgggccgctcgcgaac
ggcttcctgctgccgggcgcgaagatcgcgatcgtcaccgagtccgagctttacgcgacc
accggccgcacccgcgtgcgccgcgacgcgcgcaaggccgcgacgatggaaggctggctg
cgcgacctgtccgaactgaagcccggcgacccggtcgtgcacgtgtcgcacggcatcggc
cgctacctcggcctgatccacatggacttgggtgagggtgagaccgagttcctgcatctc
gaatacgccaacggcgacaagctctacgtgccggtgtcgcagctgcacgtcatcacccgc
tacgccggcgccgaccccgaagcggtcgacctgcaccgcctcggctccggccagtgggaa
aaggcgaagaagaaagcggcgctgcaggtgcgcgacaccgcggccgaactcctcgcgctg
tacgcgcagcgcgccgcccgccccggccatcgcttcgacttcaagcagcacgacctcgac
gcgttcgccgaaggcttcggtttcgagacgacacccgaccagcaggcggcgatcgacgcg
gttgtcgccgacatgaaatccggccagccgatggaccggctggtgtgcggcgacgtcggc
ttcggcaagaccgaagtcgcgctgcgcgccgcgttcgttgccgtcgccgacggcaaacag
gtggtcgtgctgacgccgacgacgctgctcgccgaacagcactaccagaccttcgccgac
cgcttcgccgacttcgcgatccgcatcgccgaactgtcgcgcttcaagagcgcgaaggaa
caggccgacgcactgaaacagctcgccgaaggcaaggtcgacatcatcatcggcacgcac
cgactgctgcagaaggacgtcaagttcaagcgcctcggcctcgtcatcatcgacgaggaa
caccgcttcggcgtgcgccagaaagaaatgctgaagcagctgcgcagcgagatcgacatc
ctgacgctgaccgcgacgccgattccgcgcacgctcggcctcgcgctcgaaggcctgcgc
gagttctcggtgatcgcgaccgcgccgcaaaagcgcctcgcgatcaagactttcgtccac
cgtcacagcaagggaatcatccgcgaagcggtgctgcgcgagttcaagcgtggcggacag
gtgtatttcctgcacaacgaggtcgacacgatcgacaacgtgcgcgacgacctcgccgaa
ctgctgcccgaagcgcgcatcgtcatcggccacggccagctgccggaacgcgagctcgaa
cgcgtgatgcgcaccttcacgcagcagcgcgcgaacctgctgctgtgcacgacgatcatc
gagaccggcatcgacatcccgaccgccaacaccatcatcatcaaccgcgccgaccgcttc
ggcctcgcccagctgcaccagctgcgcggccgcgtcggccgcagccaccaccaggcctac
gcgtatctcctgaccgacgcccacgcgaagcccaccgcgctcgcgcagaagcgcctcgaa
gcgatcacgatgatggaagatctcggctccggcttctacctcgcgatgcacgacctcgag
atccgcggcgccggcgaagtgctcggcgaaaaccagtccggcgaaatccagcaggtcggc
ttcagcctgtacaccgaaatgctcaagcgcgcggtgcgcgacctgcaggccggcaaggag
ccggacctgacgcagccgctcgacgtcgtctccgagatcaacctgcacaccccggcgctg
ctgccgaacgactactgccccgacgtgcaggaacgcctgacgctctacaagcgcctcgcg
aactgcgaatccgacggcgacctgcgcaacctgcaggaagaactcatcgaccgcttcggc
gagctgccgccgcagacccaggcgctgatcgagacccaccgcctgcgcctgctcgtcaaa
ccgttcggcgtcgcgaagctcgacgcgagcgacgcgcagatcagcgtccagttcgactcc
gacgcgccgatcgaccccgcaaaagtcatcttcctgatccagaaggaccgcaacaccaag
atgtccggtccggatcggctgatccgcaaggcgagcctgccgaatctcaagcagcgcgtg
cagggggtgaaggagctgctcgaggcggtgaaagcgtaa
DBGET
integrated database retrieval system
