Amedibacterium intestinale 9CBEGH2: A9CBEGH2_23690
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Entry
A9CBEGH2_23690 CDS
T06427
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
absi
Amedibacterium intestinale 9CBEGH2
Pathway
absi03030
DNA replication
absi03410
Base excision repair
absi03420
Nucleotide excision repair
absi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
absi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A9CBEGH2_23690 (ligA)
03410 Base excision repair
A9CBEGH2_23690 (ligA)
03420 Nucleotide excision repair
A9CBEGH2_23690 (ligA)
03430 Mismatch repair
A9CBEGH2_23690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
absi03032
]
A9CBEGH2_23690 (ligA)
03400 DNA repair and recombination proteins [BR:
absi03400
]
A9CBEGH2_23690 (ligA)
Enzymes [BR:
absi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A9CBEGH2_23690 (ligA)
DNA replication proteins [BR:
absi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A9CBEGH2_23690 (ligA)
DNA repair and recombination proteins [BR:
absi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A9CBEGH2_23690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A9CBEGH2_23690 (ligA)
MMR (mismatch excision repair)
DNA ligase
A9CBEGH2_23690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A9CBEGH2_23690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_lig_T4_1
RNA_ligase
HHH
Relaxase_C
DUF948
Motif
Other DBs
NCBI-ProteinID:
BBK63429
LinkDB
All DBs
Position
2430966..2432954
Genome browser
AA seq
662 aa
AA seq
DB search
MDVKNRILELRRKLDAFAYEYYVLDQPSVSDQEYDRYYQELVALEDANPEYKDPNSITQR
VGGVVLDAFTKVEHKNRMLSLGNAFNLEDLKAFDERVRAVKPDASYVVELKMDGLAISLH
YIDGRFHQAVTRGDGLVGEDVTNNVRTIPSIPMHIDAQGEVEVRGEVYMPKKSFEELNTK
REENGEELFANPRNAAAGSIRQLDSKIAAQRKLDAFLYYLEDAASFGIQTHEEALETLEK
WHIKVNPLRKVCKTIEEAWQFIQEIQEKREELPYEIDGMVLKVNELSSWNVLGTTIKAPR
YAIAYKFPAEEVVTKLLDIVVTVGRTGRVTPNAVLEPVRVAGTTVSAAQLHNEDMIKEKD
IRIHDDVVIRKAGDIIPEVVRPLVEKRDGTQGIYHFPTQCPICSGALVRLPNEAAHYCIN
QDCPARVVESMIHFAGRDAMNIDTLGDKKIEFFHKEGLLNTIEDIYRLKDHEEEILSMEG
FKEKSFMKMIDAIEKSKENPLEDLIYGLGIRQVGKKAAKVLAKHFLTMDALMAADRDAFV
AIKDIGEITADSIVAFFREEKNMELIDHLKAFGLRMDSEKEEIKESFFTGKTVVLTGTLT
QMTRNEAKAMLESLGANVSGSVSKKTDLVVYGEAAGSKLTKARDLGVEVMDEETFLQEVK
AS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggacgttaaaaatcgaatattagaattacgtagaaaattggatgcctttgcatatgaa
tattatgttttagatcagccaagtgtttctgatcaggaatatgatcgctattatcaggaa
cttgttgccttagaggatgcaaatccagaatataaagatcctaactccattacacagcgt
gtaggtggtgtagttttggatgcttttacaaaagttgaacataaaaatcgtatgttatct
ttaggaaatgcgtttaatttagaagatttaaaggcgtttgatgaaagagtgcgtgcggtt
aaaccagatgccagttatgtggttgaattgaaaatggatggtttggcaatttctctgcat
tacatagatggacgttttcatcaggctgttacacgtggggatggacttgtcggagaagat
gttacaaacaatgtgcgtacgattccttctattcctatgcatattgatgcacaaggggaa
gtggaagtacgtggagaagtgtacatgccgaaaaaaagttttgaagagctgaatacaaaa
cgagaagaaaatggtgaagaattgtttgcgaatccacgaaatgcggctgcaggaagtatt
cgtcagttagacagtaaaatagctgcccaaagaaagctggatgcgttcttatattattta
gaagatgcagcatctttcggcatacagacgcatgaagaagcactggaaactttagaaaaa
tggcatatcaaggtaaatccattgcgcaaggtatgcaagacaatagaagaagcatggcag
tttatacaggaaattcaggaaaaaagagaagagcttccttatgaaattgatggtatggtt
cttaaagtaaatgaactttcttcatggaatgttttaggaaccacaataaaagctcctcgt
tatgccattgcctataaatttcctgcagaagaagttgttaccaagcttttagatattgtg
gtaacggtaggtagaacagggcgtgttacaccgaatgcagtgctggaaccggttcgtgta
gcaggaacaacagtatctgcggcacagcttcataatgaagatatgatcaaagaaaaagat
attcgtattcatgatgatgttgtgatacgcaaagctggagatattattccggaagttgtt
cgtcctttggtagaaaaaagagatggaacgcaaggaatttatcattttccaacacaatgt
ccaatctgctcaggagcgctggttcgacttccaaatgaagcggcacattactgtattaat
caggattgcccagctcgtgttgtggaaagtatgattcattttgcaggcagagatgcgatg
aatatcgatactttaggagataaaaagattgaatttttccacaaggaaggattattaaat
acgatagaagatatttatcgtttaaaagatcatgaagaagaaattttaagtatggaagga
tttaaagaaaaatcctttatgaaaatgattgatgcgattgaaaaaagtaaagagaatcct
cttgaggacttgatttatggattaggaattcgtcaggttggtaaaaaagctgctaaggtt
ttagcaaaacatttcttgacgatggatgcattgatggcagctgatcgtgatgctttcgtt
gcgattaaagatattggagaaattacggcggatagtatcgttgcattttttagagaagag
aaaaatatggaacttattgaccatttaaaagcttttggacttcgtatggacagtgaaaaa
gaagaaattaaggaaagtttctttactggaaaaacagttgtattaactggaacacttaca
cagatgacacgaaatgaagcaaaagcaatgttggagtctttaggagcaaatgtcagtggt
tctgtttctaagaaaacggatttggtagtgtatggagaagctgccggcagtaagcttact
aaggcaagagatttaggtgtagaggtaatggatgaagaaacctttttacaggaggtgaaa
gcatcatga
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