Agaricus bisporus var. bisporus H97: AGABI2DRAFT206080
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Entry
AGABI2DRAFT206080 CDS
T03140
Symbol
AGABI2DRAFT_206080
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AGABI2DRAFT206080 (AGABI2DRAFT_206080)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abv03400
]
AGABI2DRAFT206080 (AGABI2DRAFT_206080)
Enzymes [BR:
abv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AGABI2DRAFT206080 (AGABI2DRAFT_206080)
DNA repair and recombination proteins [BR:
abv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
AGABI2DRAFT206080 (AGABI2DRAFT_206080)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
Forkhead
BRCT_2
RNA_ligase
DNA_ligase_A_C
BRCT
Motif
Other DBs
NCBI-GeneID:
18084214
NCBI-ProteinID:
XP_006461978
JGI:
Agabi_varbisH97_2_206080
LinkDB
All DBs
Position
Unknown
AA seq
1915 aa
AA seq
DB search
MQPTPAPSIPPQFDSNVPEYLPPPQNVDSAPFAVLAGLFEKLSTERKQDRRKKLLDAWFT
HWRREKGYDLYPVLRLLLPQKDRERAVYGLKEKNLAKTYIKLIPLGMRDPDAIRMLNWKR
PTEREKSSGDFPAVLYEVISKRSSVIEGSLSVDELNHILDELAQNMGKQDVQSKILQRIY
NKSTAEEQRWIIRIILKDMQISVKETTVFSVFHPDAQDLYNTCSDLKRVAWELWDPSFRL
NVQDKMVQLFHTFAPMLSKRPTRKLEDTVREMGGLEFIIEEKLDGERMQLHKRGNEYYYS
SRKGKDYTYLYGKHVGTGSLTPHIDKAFDSRVDDIILDGEMLVWDPVTERNLPFGTLKTA
ALDKTQADINPRPCFKVFDLLYLNGQSLIHKPLTFRKRNLKHCITQVKGRIECVAEFKGT
TAKDIRERMEEVMAARGEGLIIKHPLSKYTLNGRIMDWIKVKPEYMDNMGETVDLLVVAG
KYGTGKRAGGVSTLICAVFEDRRIDEDDDEPKYSTFVRIGSGLSYADYVWIRAKPWKVWN
EQQNPSFLLTEKHSHEDKGDLFLEPEDSFIVKIKAAEIVPSDQYYMGFTMRFPRAMSIRD
DLTIADCMTASAVLEGMKTERKRKMESDIAGLHPKRSAKKRKKATIIPQYQGPNLKNVSI
ESNIFDGMKFVVMSDPKSRSGDQVRRDLMKLIHANGGMCAQIVKPETFVVYGGTVMPYDL
KLVVQKNINDVIKPSWIKDSITLGEIAPFHHKYFFHATPGRKHEIDYDEGGEEETMEEDT
EAVGFSDNAEAMRVESRETSEQKESDLEDLDPDLAEWFRGGKASDGGGVESETEAESDND
SDNVDVADEEGDEFKDDWELVKSGEHTTDSEDVQDVKMGETDEAMAYDENLIFKHLCFYL
DSPMNARRNEMEVKSKHEEAITGRYLNSDSLIAELIIANGGKIVGLHEDKLTHVVLDKRD
ITRRIELIKATSQPKRRHLVICEFIEACIEENTLLDEDVRVSNVYEMSGEGDETLGENVG
VDPYPDVPCRAMANPQVSPICQLLLTLGITREDLSKRSDQMRQFLNPEQTTPSRVVDRDA
HHRSRSNSDLPSRLRSSSTSSSIARSISRNSSTSFRDSTPPITPIKSEVFDNGVPARQYN
SMELVIERQRRQNKKERRTRKERERELSRNAPNPPSPSPSNTSSQPSVSLDSFMQSRDGG
RALLADDEDGALPIITPKQSIAPVTPQKSKYYREHTEFNSTSRPGEEITRKIETPTSARM
LSASNPQSISHHQYYPYSAYGSYVSFSQDAEASTSTLPVTPQAKRTHLKVFKSPLPPSSP
PPSSPPSSPSCAINLVSSPGPIGPAPQEEEYDNLPYTLPPGPYSTNKPDLSYAALVGQAI
LSSPEHRLTLQEIYDWITIVYPYFKRGETTWMNSIRHVLSTTVCFRKVPRDRSVGRTQWA
IWDEDLECFKGGNFRKHLCKDYMKQAAAKDKQTKGKSRVRKRTDTDDADLRKSKRPRKDQ
VSSPLVASVNSQYPASFAPLFPPTRPTPHHQPYYQSCLSQTPNLPADIIFPPLPAASAFN
RVLNRRNENAPQSSASSSTSSNRAISPPQTISSSSYGTPTSSASSVPGLTPNRQSSSSPS
MPATSDMDVEGANSVCTVAGADSQQGELEQIDGDDVLPLSGGTTLKPVRFWSEPNKSNAL
EPGIKLLDSSHVVPEDEDSLLKSKKESQRAVSATQFPPFLLYPTSPTPERRAVDTIPPVS
NAEAGPSNQPRTPTPSTPPTGHTNLSSFHTPLSHKGLHMSPTASLAHYKTNLEPPPVIPF
DSEGESDPLRTPRKRKTSLDGLLGNPTTPRKMFNPNAIDSPYRTPNGFQASPFSRTPRAR
PILDPQDPRTLLDDELNRMGTLSDSPGGLFGKSRSSLLYDSPGALDLPGKYRTWW
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaacaccggccccttcaattccacctcaatttgattcaaacgtaccagaatat
ctaccgcccccacagaatgttgacagcgccccgtttgctgtcctcgctggtttgtttgag
aagctttccacagaaagaaagcaagatagaagaaaaaagttgctcgatgcttggttcact
cactggagacgtgaaaaaggatacgacctctatcccgtcttgcgacttctcttgcctcag
aaggatcgagaacgcgcagtttacggtttgaaggagaagaatctcgcgaaaacatatatc
aaactgatccccttgggtatgagggacccagatgccatccgcatgttgaactggaaaagg
ccaacagaacgcgagaaatcgtctggggactttcctgccgtgctttatgaggtcatcagt
aagcgatcctctgtgatcgagggttccttgtctgtcgacgagctcaaccacattcttgat
gagcttgcacaaaacatgggaaaacaagatgtccagtcgaagatcttacagcgtatctat
aataagtctacggcagaagaacagcgatggataatccgcatcattcttaaggacatgcaa
atttcggtgaaagaaaccactgtattttccgttttccacccagacgcccaggatctctat
aacacctgctcagatctcaagagagtggcatgggagttgtgggatccttcctttcggttg
aacgttcaggacaaaatggtacaattgtttcatacgtttgctcccatgttaagcaaacgt
ccaactcgaaagctcgaagatacagttcgagagatgggtggtttagagtttattatcgag
gagaaactcgatggagagcggatgcaacttcataagcgaggcaacgaatactactattct
tctaggaaggggaaagattatacctatctttatggtaaacatgtcggtacaggtagcctg
accccccatatcgacaaagctttcgacagtcgcgttgacgacatcattttggatggagaa
atgctcgtttgggacccagtgacggaacgcaacctgccttttgggacactcaagacagcg
gcgttagacaagacgcaagcggatattaacccacggccctgcttcaaagtttttgatctc
ctttacctcaatggccagtctctgatccacaaacctctcactttccggaaacgcaatctt
aaacattgcatcactcaggtgaagggtcgtatcgaatgtgtcgccgagttcaagggaact
acggctaaggacattagggaacggatggaagaggtcatggctgccaggggcgaaggactg
atcataaagcatcctttgtcgaaatatactttgaatggtaggatcatggattggattaag
gttaaaccagaatacatggacaacatgggtgaaactgttgacctgctcgttgtcgctgga
aaatatggtactgggaaacgcgctggaggtgtatccactctcatatgtgctgttttcgaa
gatcgtcgaattgacgaagacgacgacgagcccaaatacagtacctttgttaggattggt
tccggactatcgtatgccgactatgtttggattcgtgccaaaccatggaaagtatggaat
gaacagcaaaatccttcatttctactaacggagaagcattctcatgaggacaaaggagat
ctgttcttggagcctgaggactcatttatcgtgaagattaaggcagcagagatcgttccg
tcagatcaatattacatgggcttcacgatgcgatttcctcgagcgatgagcattcgtgat
gatcttactatcgcggactgtatgaccgcatcagctgtactggaaggcatgaagactgag
cgaaagcgcaaaatggagagtgacattgctgggcttcatcccaaaaggtctgcgaagaag
cgtaagaaggctaccataatccctcagtatcaaggaccgaatctcaagaacgtttctatc
gaatccaatatctttgatggaatgaagttcgtggtgatgtccgatcccaagtcacggtct
ggtgaccaagtccgcagagacttaatgaaactgatacatgccaacggaggtatgtgtgcg
cagatcgttaagcccgaaacgtttgttgtctatggtgggactgttatgccgtatgatttg
aagttggtggtacagaagaatattaacgacgtgatcaaaccctcgtggattaaagattcg
ataacgctcggagagatagctccgtttcatcacaagtattttttccatgccacacctgga
aggaagcatgaaatcgattacgatgagggcggagaagaggaaacgatggaagaagacacg
gaggcggtcgggtttagcgacaatgctgaagcaatgcgggtggaatcaagggagacatct
gagcaaaaggaaagcgatctagaagatttagaccctgatttggcagaatggtttagggga
ggaaaggcttccgatggcgggggggtcgagtctgaaaccgaagcggagagtgacaatgac
tcagacaacgttgatgtagcggatgaagagggagatgagtttaaagatgactgggaattg
gtgaagagcggggaacatacgacggattccgaggatgtgcaggatgtgaaaatgggcgag
acggatgaggctatggcctatgatgagaatctgatattcaaacacctgtgtttctacctt
gattccccgatgaacgcgcgtcggaatgagatggaggtgaagagtaaacacgaagaagct
atcacaggaaggtatctaaattccgattcactcatagctgaactcatcatcgcaaatggt
ggcaagattgttggtcttcacgaagacaaactgacgcacgtcgtacttgacaagcgagac
ataacgcggagaatcgagctgattaaagccacttctcagccgaaacggcgtcacttggtt
atctgtgaattcatcgaggcttgtatagaggagaacactctactggatgaggatgttcgt
gtctccaacgtgtatgaaatgtctggtgaaggagatgagactttgggtgagaatgtcgga
gttgatccgtacccggacgtgccgtgtcgagcgatggctaacccccaggtctctcccatc
tgccagctcctcctcactcttggcataacgcgtgaggaccttagcaaacgtagtgaccag
atgcgacagttcctcaatcctgaacaaaccaccccctcacgcgttgttgaccgcgacgct
caccacaggtcgcgctccaactcagatttgccctcgagattaagatcttccagcacatcg
tcgtccattgctcgttccatctccagaaacagttctacttctttccgcgactccactccc
cccatcaccccaattaagtcggaagtgtttgacaacggcgtccccgcgaggcagtacaat
tcaatggaactggttatcgagcgccaacgtagacaaaataaaaaagaaagaagaactcgt
aaagaaagggaacgcgagctgtcaagaaatgctccaaatccaccttcaccctcacccagc
aacacgtcttcccaacctagtgttagtttggattcttttatgcaatcgcgcgacggaggc
agggcgcttctcgcagacgacgaggatggggcactgcccatcatcacccccaagcaatct
atcgcgcctgtcacgcctcaaaagagtaaatattacagagaacataccgagttcaattcc
actagtcgcccgggagaggaaatcactcgaaaaattgagacacctaccagtgcgagaatg
ctgtcagcctcgaatccgcaaagcatttctcatcatcaatattatccctactcagcctac
ggtagctatgtatctttcagccaggatgcggaagcttcaacttccacccttcccgtgaca
cctcaagctaagcgtacccacctgaaagtgttcaagtcaccgctacctccgtcatcacca
ccgccttcctcacctccttcttccccatcatgcgccataaatctggtttcatctccgggc
ccaatcggcccggctcctcaagaggaagaatatgacaatttaccatacaccctcccacca
ggcccgtactctacaaacaagccggacttatcatacgcggcgctcgtgggacaagccatc
ctatcatcgccagagcatcgtttaactttgcaggagatctatgattggatcaccatcgtg
tatccgtattttaagcgtggggagacgacctggatgaacagcatccgtcacgtcttaagt
accacggtgtgttttcgcaaagttccaagggatcgatctgttggtcgcactcaatgggct
atatgggatgaagatctagagtgtttcaagggaggcaacttccggaagcatttgtgcaaa
gactatatgaaacaagctgctgccaaggataagcagaccaagggaaagtctcgggtgcga
aagagaactgatactgatgatgccgaccttcgcaaatctaagcgccctcgcaaggatcaa
gtctcatcccccttggtggcatcagttaacagtcaatatccggccagttttgctcccctc
ttcccccctacccgacctaccccacatcatcagccctattatcagtcatgcttgtctcaa
actcctaatctcccggccgacatcatatttcctcctctccccgccgcgtcggctttcaat
cgggttttgaataggcgtaacgagaacgcaccgcaatcttctgcaagcagttcaacctct
tccaacagagccatttccccgccgcagactatctcgagttcttcatacgggacacccact
tcctcggcgtcatctgtccctgggctcactcccaaccggcagtcttcaagttcaccgtcg
atgcctgcgacaagcgacatggatgtggaaggcgcgaactccgtgtgtacagtcgcagga
gcggattctcagcagggcgaattggagcagattgacggcgatgatgtccttcctctgagt
ggcggcacgaccttgaagcctgtccgattttggagtgagccaaacaagagtaatgcgctc
gaacccggtatcaagcttctagattccagccacgtcgttcctgaagatgaagatagtctc
ctcaagtcaaagaaagagagtcaaagagctgtttctgcgactcaatttccacctttcctc
ttatacccaacatcacccactcctgaaaggagagcggtggatacgatccctccggtgtcc
aatgccgaggctggaccttccaaccaaccaaggactcccactccgtccacccctcccacc
ggccatacaaatctttcatcttttcataccccactgtcgcataagggtctacacatgagt
ccaacagcgagtctggctcattacaagactaatttggagcctcctcctgtcataccgttc
gacagcgaaggcgagtccgaccctctacgaacgccacgcaaacgcaaaacgagcttggac
ggacttctaggcaatcctaccactccaaggaagatgttcaatcctaacgccatagattcg
ccgtatcggacgcccaatggattccaggcttcaccctttagccgaactcctcgagcaaga
cctatactcgatccacaagatcctagaacattgcttgatgacgaactaaacagaatggga
acactctcagacagtcctggagggctatttggcaagagtcgaagttcgttgttgtatgat
agtccaggcgcgctggatttgcctggcaagtatcgaacttggtggtag
DBGET
integrated database retrieval system
