Agaricus bisporus var. bisporus H97: AGABI2DRAFT214235
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Entry
AGABI2DRAFT214235 CDS
T03140
Symbol
AGABI2DRAFT_214235
Name
(RefSeq) hypothetical protein
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
abv
Agaricus bisporus var. bisporus H97
Pathway
abv03030
DNA replication
abv03410
Base excision repair
abv03420
Nucleotide excision repair
abv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
03410 Base excision repair
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
03420 Nucleotide excision repair
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
03430 Mismatch repair
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abv03032
]
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
03400 DNA repair and recombination proteins [BR:
abv03400
]
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
Enzymes [BR:
abv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
6.5.1.6 DNA ligase (ATP or NAD+)
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
DNA replication proteins [BR:
abv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
DNA repair and recombination proteins [BR:
abv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
NER (nucleotide excision repair)
Other NER factors
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
MMR (mismatch excision repair)
Other MMR factors
AGABI2DRAFT214235 (AGABI2DRAFT_214235)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DUF4746
Motif
Other DBs
NCBI-GeneID:
18084800
NCBI-ProteinID:
XP_006454327
JGI:
Agabi_varbisH97_2_214235
LinkDB
All DBs
Position
Unknown
AA seq
822 aa
AA seq
DB search
MGRQQTLGKFFEMPKGLKNAPPQQSSLLDMWGKGKRKAVSGPKKEEADEDIVPENNKMDA
NKPGESSSQSEITKIGPPSKRRRIVTSDDDEPSSSVRRTINSPTVGTSPPVSRTSSPQSS
PPPKSKKARIPVRAAASEAESEAAATSEPSDDDGEEEIERDEQEDNDESIMAVEGAALLR
IKEVDIPGGWKVGQPVPYAALAKTFSLIESTTKRLEKNSYLTSFLLLVIQRSAKGDWNSL
LQTVYLCINRLSPDYEGIELGIGESLLIKAIAESTGRSLAVIKADLKREGDLGLVAMNSK
TSQKTLFKPKPLTLPFVFSHLKDIATTSGHSSQAKKVSIITKLLAACQGLEAKYIIRSLE
GKLRIGNAERSVLVAIANAVVLAEKEASNRNWSNEKLIKRLEESTLRIKSVYSELPNYDK
VIPALLDVGIDGLEEVCKLTPGVPLKPMLAKPTKAIGEVLDRFENQHFTCEYKYDGERAQ
VHKLEDGSVAVFSRNSEDMSKKYPDLVEQLPKCIKETTKSFVLDAEAVAIDRKTGKLMPF
QELSRRKRKDVKVEDIQVRVCLFAFDLLYLNGEPLLRKPLSERRKLLLEHFQPIDGEFNF
AKASNSQSVEEIQAFLEESVKDGCEGLMVKMLDGEPSFYEPSRRSVNWLKLKKDYLAGVG
DSLDLVVVGGYYGKGKRTNVYGAFLLACFDPDSEEYQTICKIGTGFSDEILQSHYNELKP
LELEKARGDVNIGGAKPDIWFEPKIVWEVLTADLSLSPIYTAAHGTVDERGISLRFPRFI
RVRDDKHVEDATASEQVAEMYGRQALANRDGKKKGGDDDGFW
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtcagcaaacattgggtaaattctttgaaatgccaaaaggtttgaagaatgcc
cctccccagcagtcaagtctgctagacatgtggggtaagggaaagcggaaggctgtcagt
ggacctaagaaggaagaggcggacgaggatatagtgcccgagaacaataaaatggatgca
aacaaaccaggcgaaagctcctcgcagagtgaaataaccaaaattggcccaccgtcaaaa
aggcgcagaatagtcacctcagacgacgatgaaccatcttcaagtgttcggcgaactatc
aactctccaactgttgggacctctcctcccgtttccaggacatcttcaccccaatcctca
ccacctccgaaatccaaaaaagcgagaatacccgttcgagcagctgcctcggaggctgaa
tcggaagcggccgcaacgtctgaaccaagtgacgatgatggtgaagaagaaattgagagg
gatgaacaagaagataacgatgagagcattatggctgtagaaggagctgcccttttacga
atcaaagaagttgacatacccggaggatggaaagttgggcagcctgttccctacgcagct
ctggcgaaaacattttccctcatagaaagcaccactaagcgtttagaaaagaattcatac
cttacatcgttcctgttactagtcatacaacgcagcgcaaagggcgattggaattcgctc
ctacaaacagtttacctctgcatcaatcggttatcaccagactatgaaggcattgagctt
ggcattggcgaaagtttgttgataaaagcaatcgcagaatcaactggtcgaagtttggcg
gtgattaaagcagacttgaaacgagaaggtgatttgggacttgtcgcaatgaattcgaaa
actagccagaaaactctttttaaacccaagccactaacccttcctttcgtattctctcat
ctcaaagacattgctactacgagtgggcactcctctcaagcaaagaaggtttcaatcatc
accaaacttctcgcggcatgtcaaggcttggaggccaaatacattatccgtagtctggaa
ggcaaactacgcatcggcaatgccgagcgatcagttctagtcgctattgcgaatgctgtt
gtcctggcagaaaaagaggcatccaacagaaattggtcaaatgagaagttaatcaaacga
ctggaagaatccactctcagaatcaagtcggtttatagtgaattgccaaactatgacaag
gtcatccctgctcttctcgatgtaggtattgatggtctggaggaagtgtgcaaattgaca
ccaggtgtccctttaaaacctatgctagcgaaacctaccaaggcaattggcgaagtcctt
gatagattcgaaaaccagcatttcacttgcgagtacaaatacgatggagagcgtgcccaa
gtacacaaattagaagacggtagtgtcgcggtcttcagtcgaaattctgaagatatgagt
aagaaatatcccgatctcgtggaacaattgcccaagtgcatcaaagaaacgactaaatca
ttcgtgctcgatgcggaggctgttgcaatagaccggaaaacggggaagcttatgcccttc
caggagctaagtcgacggaaacgcaaggacgtcaaagtagaggatatccaagttcgagtg
tgtttgttcgcctttgatttattataccttaatggcgagcccctgctacgcaaacctttg
tcagagaggaggaaacttttacttgaacatttccaacctattgacggagagttcaacttt
gccaaggcgtcgaatagtcaatcagttgaagagatccaagctttccttgaggagagtgtg
aaggacggttgtgaagggttgatggtgaagatgttggatggcgagcctagcttttatgag
ccaagtcggcgtagtgtcaactggctgaagctcaaaaaggattatctggctggtgttggg
gattctttggatttggtcgtggttggtggttactatggcaaaggaaaacgaacaaacgtc
tatggagcctttctccttgcgtgttttgacccagactcggaagaataccaaaccatctgt
aaaattggaaccgggttcagtgatgagatcctccaatcacattacaacgaactcaaaccg
ctcgaattagaaaaggcgcgtggagatgtcaacatcggaggagctaaacccgacatctgg
tttgagccaaaaattgtgtgggaagtactcactgcggacttgagcttgagtcctatttat
actgccgctcacggaacggtggacgaacgaggcatttcgcttcgatttcctcgctttatc
agagtgcgagatgacaagcatgttgaggatgcaacagcatctgaacaggttgctgagatg
tatgggcgacaagctctcgcgaatagagatgggaagaagaaagggggtgacgacgacgga
ttttggtga
DBGET
integrated database retrieval system
