Actinoalloteichus fjordicus: UA74_22360
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Entry
UA74_22360 CDS
T04639
Name
(GenBank) DNA polymerase LigD-like ligase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acad
Actinoalloteichus fjordicus
Pathway
acad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UA74_22360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acad03400
]
UA74_22360
Enzymes [BR:
acad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UA74_22360
DNA repair and recombination proteins [BR:
acad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UA74_22360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
APU16490
LinkDB
All DBs
Position
complement(5303550..5304704)
Genome browser
AA seq
384 aa
AA seq
DB search
MWVDRAGRSGAGRHVGRFRLLLSSAGRSAPAACLGLFQSAWSAGSGDDGPMSEGSGAGRQ
AERLPVLRPMLATGGQPMPTGPDWAWEFKFDGVRAIAAGDRAGVRLTSRNGNDITATYPE
LTVLGEILGAQRAVLDGEIVAMDDKGRPSFALLQRRMHVQRPTARLTGEIPVACFVFDLL
HLDGVSLLGESYLRRRELLDGLALDGRSARVRVPPSHRDVDPRRLLDIARDNGLEGTIGK
RVASGYRPGVRSRDWLKFPLINTYEVVICGWQPGGGRRAGRIGSLMLGAHDSAGELRYVG
HVGTGFTERMLAELLGMLQPIERPTSPFAGPVPREYSRAAHWVEPRLVGEVVYRTWSPDG
RLRHSAWRGLRPDRDAREISLPAW
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
gtgtgggtcgatcgggccggtcgatcgggcgcaggacgacatgtcggccgattccgtctc
ctcctctcgtccgccggccggtcggccccggccgcctgtctcggactgtttcagtcggcg
tggtcggcgggctcgggcgacgatggcccgatgtcggagggcagcggtgcaggcaggcag
gcggagcgtcttcccgtgctccggcccatgctcgcgaccggcgggcagccgatgccgacg
ggtccggactgggcctgggagttcaagttcgacggcgtgcgggccattgcggcaggcgat
cgggcgggcgtccgcctgacgagccgaaacgggaacgacatcacggcgacctacccggag
ctgacggtgctcggcgagatcctcggcgcgcagcgggccgtgctggacggcgagatcgtc
gccatggacgacaagggcaggccctcgttcgcgctgctgcaacgtcgaatgcacgtccaa
cggccgaccgcccgactgaccggggagatcccggtcgcctgcttcgtcttcgacctgctc
cacctcgatggcgtctcgctgctcggcgagtcctacctccggcggcgggagctgctcgac
ggcctggcgttggacggtcggtccgctcgggtccgagtgccgccgagccaccgggacgtc
gacccccggcggctgctcgacatcgcccgcgacaacggactggaaggcacgatcggcaag
cgggtcgcgtcgggctatcggccaggagtccgcagccgcgactggttgaagttcccgctg
atcaacacctatgaggtggtgatctgcgggtggcagccgggcgggggacggcgggccggg
cggatcggctcgctgatgctcggcgcccatgactcggcaggcgagctgcggtacgtgggg
cacgtcggaaccgggttcacggagcggatgctcgccgagctgctcggcatgctccagccg
atcgaacggccgacgagtccgttcgccgggccggttccgcgcgagtactcccgcgccgcg
cactgggtcgagcctcggctcgtcggggaggtcgtctatcggacgtggagccccgacggc
aggctccggcactcggcctggcgcggccttcgccccgaccgggacgcacgggagatcagc
ctgcccgcctggtag
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