Alkalicella caledoniensis: HYG86_09505
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Entry
HYG86_09505 CDS
T07204
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acae
Alkalicella caledoniensis
Pathway
acae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYG86_09505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acae03400
]
HYG86_09505
Enzymes [BR:
acae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYG86_09505
DNA repair and recombination proteins [BR:
acae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYG86_09505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QNO14988
UniProt:
A0A7G9W8H6
LinkDB
All DBs
Position
complement(1906972..1907874)
Genome browser
AA seq
300 aa
AA seq
DB search
MTQKLTINAVEVSLSNLEKTYCPEGNITKKDCINYYIRVYPYIKSHLENRPISLTRYPNG
FNMPGFYQKNAPQGKPHWVKTIGIKNIEDYPLINNMETFLWLCNLGTIEFHPWLSNINSI
ESPDYGVFDIDPMEKFGFKEVVEIAQKIHDVLELLKIQGYPKLSGSTGMQIFVPLDNIYT
YKEVREFIRLVYVIVHNQLPLTTTMTRKVNDREGKIYLDYLQNAKGQTIVAPYSIRPKKN
APISVPVTWEDVYKENLSAQKYNIKNSIEKIECTADHFKQVILNKQNINKAYNILENIIL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaaaactaactataaatgctgtagaggtatcattatctaacttagaaaaaact
tattgcccagaaggaaacataacaaaaaaggattgtataaactactatataagagtgtac
ccatacataaaaagccatcttgaaaataggcctatttccttaactaggtacccaaatggg
tttaatatgcctggtttttatcaaaagaatgcacctcaaggaaaaccccactgggtaaaa
actataggtattaaaaacatagaagattaccctctgataaataatatggaaactttttta
tggctttgtaatttagggacaattgagtttcatccatggttatccaacattaattcaatt
gaaagtccagactatggagtttttgatattgaccctatggaaaagtttggatttaaagag
gttgtagagatagctcagaagattcatgatgttttagagttattaaagatacaagggtat
cccaaactttctggatctacaggaatgcaaatatttgtccccctagacaatatatacact
tataaagaagtaagggaatttattagattagtttatgtaatagttcataatcagctgccg
ttgaccacaacgatgacacggaaagtaaatgatagggaagggaaaatatatttggattac
cttcaaaatgccaagggacagaccatcgtagctccctatagtataagaccaaaaaaaaat
gctcctatttcggtgccagtaacgtgggaagatgtttacaaagaaaatctaagcgctcag
aaatataatataaaaaatagtattgaaaaaattgaatgtaccgcagaccattttaaacag
gtcatcttaaataaacaaaatataaacaaagcatacaatattctggaaaatattattcta
taa
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