Alkalicella caledoniensis: HYG86_17850
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Entry
HYG86_17850 CDS
T07204
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
acae
Alkalicella caledoniensis
Pathway
acae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG86_17850 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acae03019
]
HYG86_17850 (rny)
Messenger RNA biogenesis [BR:
acae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYG86_17850 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KhpA-B_KH
HDOD
KH_2
Fez1
DUF2877
Motif
Other DBs
NCBI-ProteinID:
QNO16758
UniProt:
A0A7G9WDJ6
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Position
3627578..3629116
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AA seq
512 aa
AA seq
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MDTTQILITAAVGASGLGAGYMLRKMIAEAKISSAEQAALKIVEDAKKDAEGKKREMVLE
AKEDVLKLRSEFERESKDRRQEIQRQEKRIIQKEETLDRKIDNLERKEDNLSKKENDINL
LEEKVKQTQLDQKKELERISSLTTDEAKDLLLSNVKKEIQHEMAIMIKEVESQAKEEAEK
KAREIISLAIQRCAADHVAESTVSVVPLPNDEMKGRIIGREGRNIRALETLTGIDLIIDD
TPEAVILSGFDPVRREIARIALEKLIVDGRIHPGRIEEMVTKAQKEVETQIREEGEQATF
EAGIHGIHPELIKLLGRLKFRTSYGQNVLKHSLEVSHLAGVMAAELNADIKLAKRGGLLH
DIGKAVDHEVEGPHVAIGAELAKKFKESNEVIHCIAAHHGDEEPQTIEAVIVQAADAISA
ARPGARRETLENYIRRLEKLENIADSFEGVERSFAIQAGREIRIMVKPDKIDDLSATSIA
RDITKRIEDELEYPGQIKVTVIRETRVVEYAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atcgacactacacaaatcttaataactgcagctgtaggtgcttcgggcctaggcgctggt
tatatgttacgcaaaatgatagctgaagctaaaatttcctctgcagaacaggcagctctt
aaaatagttgaagatgctaaaaaagatgctgaagggaaaaaacgtgaaatggttttagaa
gcaaaagaagatgttctaaaactaaggtcagagtttgaaagagagagtaaagatcgtaga
caagaaattcaacgtcaagaaaaaagaattattcaaaaggaagaaacactagaccgtaaa
attgataatttagaacgtaaagaagataacctcagtaaaaaagagaatgatattaacttg
ttagaagaaaaagtaaaacagactcaacttgatcaaaagaaggaattagaacgcatctca
tcattaacaacagatgaggctaaagacttgcttttatcaaatgttaaaaaagaaattcaa
cacgaaatggcaattatgataaaagaagtggaatctcaagctaaagaagaagctgagaaa
aaagctagagagattatttcactggcaatccaaagatgtgcagcagatcacgttgccgag
tcaacagtatccgttgttcctcttccaaatgatgaaatgaagggtagaataataggtcgt
gaaggtagaaacattagggcattagaaaccctaacaggtatcgatttaataattgacgat
acccctgaggctgttatattatccggatttgaccctgtacgacgtgaaattgcaagaatc
gcattagaaaaactaattgttgatggaagaatccatccaggtagaattgaagaaatggtt
actaaagctcaaaaagaagtcgaaactcaaattcgtgaagaaggcgaacaagcaacattt
gaagctggtatacatggtatacatccagagcttattaaactattaggaagactcaaattt
aggacaagttacggacaaaatgttttaaaacattctctagaggtttcacatttagcaggt
gttatggcagcagaactaaatgctgacattaagctagctaagaggggtggcctattacat
gatatcggtaaagccgttgaccatgaagtagaaggccctcacgtagccattggagctgaa
cttgctaagaagtttaaagaatcaaacgaggttattcactgtattgcagcacatcatggt
gacgaggaacctcaaaccattgaagctgtaatagttcaagcggcagatgctatatctgca
gcaagacctggcgcaagacgcgaaactttagaaaattatattagacgacttgaaaaactt
gaaaacatcgctgattctttcgaaggcgttgaaagatcatttgccatacaagctggtaga
gaaatccgcataatggttaagcctgataaaatcgatgatttatctgctacatccattgca
agggatattactaagcgtatagaagatgaacttgaataccctggacagattaaagttact
gttattagagaaactagagttgtagaatatgcaaaataa
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