Arthrobacter caoxuetaonis: NF551_00265
Help
Entry
NF551_00265 CDS
T08978
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acao
Arthrobacter caoxuetaonis
Pathway
acao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NF551_00265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acao03400
]
NF551_00265
Enzymes [BR:
acao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NF551_00265
DNA repair and recombination proteins [BR:
acao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NF551_00265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
USQ57345
LinkDB
All DBs
Position
51142..53748
Genome browser
AA seq
868 aa
AA seq
DB search
MATTGTAPKQRETVNVDGHRLRLTSLDKVLYPETGTTKADVLSYYAAIADTLIPYARNRP
ATRKRWVNGVGTPQKPGQVFFQKNIDDSAPSWVKRNAIEHKESTNVYPLVNDLATLTWLA
QLAALEIHVPQWQFGPRGGKQNPDRLVLDLDPGEGASLAQCAEVARLARGILTDMGLDAR
PVTSGSKGIHLYAALDQKQTSDEVSAVAHELARALEADHPDLVVSDMKKTLRKGKVLVDW
SQNNANKTTICPYSLRGRFRPTVAAPRTWAELEDPDLAQLDYEQVLERVDTLGDPLAGMH
SGQADAGDLDASTAPDRLHKYRSMRDAAKTPEPVPEEAPKAVEGDGNSFVIQEHHARRLH
WDFRLERDGVLVSWAVPKGPPTTPNRNHLAVQTEDHPLDYGGFSGTIPKGEYGAGEVTIW
DHGTYDTEKWRPDKEVIVTVHGQPDGGLARDGAADRRFAFIHTGGEDGKNNWLLHLMKDQ
RPAEAPETGGGSESAAKRTPSTKRATSTPNPAEAVKTAAKARPDPLPLPDASAVRQDIKD
SGMPSLKPMLATLGSKADINDDADWAFEMKWDGVRAIAEVTPEGTRLISRNGNDMTVAYP
ELQELGRSLNGGRAVLDGEIVALNKAGRPDFGLLQPRMHLTRARDAEAAAAKTPVQFMIF
DLLWLDGNSLLELSWEQRREILEQAVESSDDGGHIQVPPALDLGMEDAVEASKELGLEGV
MAKRRSADYSAGIRSRSWIKLKNQFSQEVVIVGWRPGQGNRANKVGSLLVAVPDGTELQY
IGRVGSGLSEKDLALVGSRLKKLSRKTAPLDDVPRADASDAHWVRPVLVGEVTYAERTGT
GKLRHPVWRGLRPDKRPSDVVPEIPAPS
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggcaactacgggaacggccccgaagcagcgggaaacagtcaacgtggacggacaccgc
ctgcgcctgacctcgctggacaaggtgctctaccccgaaaccggtaccaccaaagcggat
gtgctgtcctactatgccgccattgcggacaccctgattccgtacgcccgcaaccggccc
gccacccgcaagcgctgggtcaacggcgtcggaactccgcagaagcccgggcaggtcttc
ttccagaagaacatcgacgactccgcgcccagttgggtgaagcgcaacgccattgagcac
aaggagagcacgaacgtctatccgctggtcaatgacctggccacgctgacctggctggcc
cagctggctgccctggaaatccacgtcccgcagtggcagttcgggccgcggggaggaaag
cagaatccggaccggctggtcctggacctggatcccggggaaggcgcctcgctggcgcag
tgcgccgaggtagcccgcctggcccggggcatcctcaccgacatggggctcgacgcccgc
ccggtcaccagcggttccaagggcatccacctttacgctgccctggatcaaaagcagacg
tcggatgaggtgagcgccgtcgcgcatgaattggcgcgggcgctggaagctgaccacccg
gacctggtggtgagcgacatgaagaagacgctgcgcaagggcaaggtgctggtggattgg
agccagaacaacgccaacaagaccaccatttgcccgtactcgctgcgcggacggttccgc
ccgacggtcgccgcgccgcggacctgggcggaactggaggaccccgacctggcgcagctg
gactatgagcaggtcctggagcgggtggacaccctgggggatccgctggccggaatgcac
tccggacaggcggatgccggcgaccttgacgcgtcgacggcaccggacaggctccacaag
taccgcagcatgcgcgatgccgcaaagacaccggagcccgttccggaagaagcgcccaag
gccgtggagggcgacggcaacagcttcgtcatccaggagcaccacgccaggcggctgcac
tgggacttccggctggagcgcgacggcgtcctggtctcctgggcagttcccaaaggcccg
cccactacgccgaacagaaaccacctggcggtgcagacagaggaccatccgctggattac
ggcggcttctcaggtaccattcccaagggtgaatacggtgccggtgaagtgacgatctgg
gaccacggcacctatgacacggaaaaatggcgcccggacaaggaagtcattgtcaccgtg
cacggccagcccgacggcggcctggcccgggacggtgcggcggaccggcgatttgccttc
atccataccggcggcgaggacggcaagaacaattggctcctgcacctgatgaaggaccag
cgcccggcggaagctccggagacaggagggggctcggagtctgcggccaagcggaccccg
tccacgaaacgcgccacgtccactccgaaccctgcagaggcagtgaagaccgcggccaaa
gcccggccggacccgctgccgcttccggacgcttcggcggtcaggcaggacatcaaggac
tccggcatgccgtccctgaaacccatgctcgccacgctgggttccaaggcggatatcaac
gacgacgccgactgggcgttcgagatgaaatgggacggtgtgcgggcgatcgccgaagtg
accccggagggcacccggctgatcagccgcaacggcaacgacatgaccgtggcgtacccc
gaactgcaggaactcggccgctcgctgaacggtgggcgggcggtgctggacggggagatc
gtggcactgaacaaggcaggacgcccggacttcggcctgctccagccgcgcatgcacctg
acccgcgcccgcgacgcggaagccgcggcagccaagactccggtgcagttcatgatcttc
gacctgctctggctggacgggaactccctgctggagctcagctgggaacagcgccgcgaa
atcctggaacaggccgtggaatccagcgacgacggcgggcatatccaggttccgcccgcc
ctggacctgggcatggaggacgccgtcgaggccagcaaggaactggggcttgagggcgtc
atggccaagcgccgttcagcggactactcagccggcatccgttcgcgcagctggatcaag
ctgaagaaccagttcagccaggaagtagtcatagtgggctggcggccgggccagggcaac
cgggccaacaaagtcgggtccctgctggtggcagtgccggacggaaccgagctgcagtac
atcggccgggtcggctccgggctgagcgagaaggacctcgccctggtgggctcccggctg
aagaaactctcccgcaagaccgctccgctggacgacgtgccccgggccgacgcctccgac
gcgcactgggtccgcccggtcctggtgggtgaggtgacctacgcggagcggacgggcacc
ggcaagctccggcacccggtgtggcgcgggctgcggccggacaaacggccctccgacgtc
gtaccggaaattcccgcaccgtcctag
DBGET
integrated database retrieval system
