Arthrobacter caoxuetaonis: NF551_11270
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Entry
NF551_11270 CDS
T08978
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
acao
Arthrobacter caoxuetaonis
Brite
KEGG Orthology (KO) [BR:
acao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acao03019
]
NF551_11270 (hrpA)
Enzymes [BR:
acao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NF551_11270 (hrpA)
Messenger RNA biogenesis [BR:
acao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NF551_11270 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
ABC_tran
ResIII
AAA_23
SRP54
AAA_30
nSTAND3
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
USQ56328
LinkDB
All DBs
Position
2455020..2458916
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AA seq
1298 aa
AA seq
DB search
MALTISYPPQLPVSERRDDIMAAIAANQVTVIAGATGSGKTTQIPKMCLELGLAEKGLIG
HTQPRRLAARTVAERIAEELDVEIGAEVGFQVRFTGETSRDTKVKLMTDGILLAEIQHDR
KLKKYSTIIIDEAHERSLNIDFILGYLKRLLPERPDLKIIITSATIDPERFAQHFASPDG
TPAPIIEVSGRTFPVEIRYRPLNQPALGAADDEDELEEDRDPLDAVCDAVDELSREAPGD
ILVFFSGEREIRDAADALRGTITRNPRLANTEILPLYARLSLAEQHRVFSPGKQRRIVLA
TNVAETSLTVPGIKYVIDTGTARISRYSHRTKVQRLPIERISQASANQRSGRCGRVSDGI
AIRLYSEDDFEARPEFTDPEILRTNLAAVILQMAAMGVAQGPKDVADFPFVQPPDAKAVN
DGALLLRELGALAPKGGITAVGRKLAQLPVDPRLGRMIVEAGQRGCVREVMVLAAALTIQ
DPRERPSKDDPARAQKAAELHKRFVDENSDFTGFLNLWRYVQEKQKELSSSQFRKLCRNE
FLNFLRIREWQDLFAQLRQLAKPLGITLAPGEVDPVGREKDVHISLLAGLLSHIGLYDQR
KREYAGARGTRFAVFPGSALFKKSPDWVMAAELVETSRLWARIAAKFDPLWVEEVAPHLI
KRTYSEPHWSKRSGSVMAYEKVTLYGVPVIPRRSVNYGRIDPVLSREMFIRHALVEGDWR
THHKFFHRNQALLAEVEELETRVRRRGLRVDDETLFEFYDERIGSEVVSERHFDKWWKHA
RHEDPKLLDFDPDALRTDDAAGLDEAEFPKTFRYADFDLPLSYEFTPGVPGANDGVSVEV
PVLFLNQLDPEPFRWQIPGLRAELITALIKSLPKAVRKNFIPAPDVARAAAAALAADFDP
ASDALEPSLELALRRLKGHIIPPGSWNWDAIPEHLRMSFSVVDSSGRILDEGKDLAALQE
SLAPATRRAIAESLGATPGTVKPAPKAKGKPDRTAGEDAASNGQGTPSFREETGLTEWSV
GTIQRQIATLVAGHTVTGYPALVDEGTTAGLRVYQSAGEQAAAMRGGVIRLLALRVPSPA
KYVLEHLSNAEKLTFSQNPHGSVAALIQDCTLAAVDKLTPEDLPWSREEFDALYEKVRAE
LIDTVFTVTAIVEKVLSATRRIQKQLKGTTSLALISALNDVRAQLEQLVYPGFVARTGYA
QLSQLPRYLAGIERRLEKLPTNVQRDSLSMAVVQGLEDDYDDAVAALVPGRGTPPALAEV
RWMIEELRISFFAQELGTARSVSEKRIRTALNQALAPA
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggcactgacaatttcctatcccccgcagcttccagtctcggagcgccgggatgacatc
atggccgccatcgcggccaaccaggttaccgtgatcgccggtgccaccggttcgggaaaa
accacccagattccgaagatgtgcctggaactgggcctggcggagaagggcctgatcggc
catacgcagccccggcggctcgctgcccgtaccgtcgcggaacggatcgcggaggagctc
gacgtcgaaatcggcgccgaagtgggcttccaggtgaggttcactggagagaccagccgg
gataccaaggtcaagctgatgaccgacggaatcctgctcgcggagatccagcacgaccgc
aagctcaagaagtacagcaccatcatcatcgacgaggcgcacgagcgcagcctcaacatc
gacttcatcctcggctacctcaagcgcctgctgcccgaacgcccggatctgaagatcatc
atcacctccgccacgatcgatcccgaacggttcgcgcagcacttcgcgtccccggacggc
acgccggcacccatcatcgaagtctccggccggaccttcccggtggagatccgctaccgc
ccgctgaaccagcctgccctcggagcagcggacgacgaggacgagctcgaagaagaccgc
gacccgctggatgctgtctgcgacgcggttgacgaactctcccgcgaggctcccggggac
atcctggtgttcttttccggcgaacgtgagattcgggacgccgccgacgcgctgcgcggc
accatcacccgcaatccccgcctggccaacacggaaatcctgccgctgtatgcccggctc
tccctggcggaacagcaccgggtgttctcccccggcaagcagcgccgcatcgtcctggcc
acgaacgttgcagagacctcgctgacggttcccggcatcaagtacgtgatcgacaccggc
accgcccgcatttcccgctactcgcaccgcaccaaggttcagcgcctgccgatcgagcgc
atctcccaggcctcggccaaccagcgctcgggccgctgcgggcgtgtctcggacggcatc
gccatccgtctctattccgaggacgacttcgaagcccggccggaattcaccgacccggag
atccttcgcaccaacctcgctgcggtcatcctccagatggccgccatgggtgtggcccag
gggcccaaggacgttgcagacttcccgttcgtccagccgccggatgccaaagcagtgaac
gacggcgcgctgctgctgcgcgagctcggtgccctggcgcccaagggcgggatcaccgcc
gtcggacgcaagctggcccagctccccgtcgacccgcgcctgggccgcatgatcgtggag
gccgggcagcgcggctgtgtccgcgaggtcatggtgctcgctgcggcgctgaccatccag
gacccgcgtgaacggccgtccaaggacgatcccgcccgggcccagaaggccgcggaactg
cacaaacggtttgtcgacgagaattcggacttcaccggtttcctgaatctctggcgctac
gtccaggaaaagcagaaggaactctcctcctcccagttccgcaagctgtgcaggaacgag
ttcctgaacttcctgcgcatccgggaatggcaggacctcttcgcccagctgcggcagctg
gccaagccgctggggatcacccttgctcccggcgaggtggatcccgtaggccgcgagaag
gacgttcacatctccctgctcgccgggctgctgagccacattggcctctatgaccagcgc
aagcgcgagtatgccggcgcccgcggcacccgttttgcagtgttccccgggtctgccctg
ttcaagaagtcccccgactgggtgatggcggccgagctggtggaaacttcacgcctttgg
gcccggatcgccgcaaagtttgatccgctgtgggtggaggaagtcgctccgcacctgatc
aagcgcacctacagcgagccgcactggtccaagcgcagcggttcggtgatggcctatgaa
aaggtcacgctctacggtgtgccggtgattccgcgccgcagcgtgaactacggccggatt
gatccggtgctgtcccgcgaaatgttcatccggcacgccctggtggagggcgactggcga
acccaccacaagttcttccaccgcaaccaggccctcctggccgaagtcgaagagctggag
acccgggtacgccgccgcggcctgcgggtggacgacgagaccctgttcgagttctacgac
gaacgcatcggcagcgaggtggtctccgaaaggcacttcgacaaatggtggaagcacgcc
cggcatgaggaccccaagctgctggacttcgatccggacgcgctgcgcaccgacgacgcc
gccggtctggacgaggcggagttccctaagaccttccgctacgcggacttcgacctgccg
ctttcctacgagttcactcccggtgttccgggtgccaacgacggcgtgagcgtcgaggtg
ccggtgctgttcctgaaccagctggaccccgagcccttccgctggcagatcccgggcctg
cgggccgaactgatcaccgcgctgatcaagtccctgccgaaggccgtgcggaagaacttc
atccccgcgccggatgtggcccgggccgccgcggcggcgttggcagcagacttcgatccg
gcgtcggacgccttggaaccgtcgctggaactggccctgcgccggctcaagggacacatc
atcccgccgggttcctggaactgggacgccatcccggaacacctgcggatgagtttctcc
gtggtggattcctccggccgcatcctggacgaaggaaaggatcttgccgccctgcaggaa
tccctggcgccggcgacccggcgggcgattgccgaatccctcggtgccacgcccggaacg
gtgaaaccggctccgaaggccaagggcaagccagatcgcaccgcgggagaggacgctgca
tcgaacggacaaggcacgccgtcgttccgggaagaaaccggcctcaccgagtggagcgtc
ggcacgatccagcggcagatcgccaccctggtcgcgggccacacagttaccggctacccc
gccctggtcgacgagggcaccaccgccggcctgcgtgtttaccaaagcgccggggaacag
gccgcagcgatgcgcggcggagtcatccgcctgctggccctgcgtgtccccagtcccgcc
aagtacgtgcttgaacacctcagcaacgcggagaagctgaccttcagccaaaacccgcac
ggctcggtggcggcactgatccaggactgcaccttggccgcggttgacaagctcacgccg
gaggacctgccctggtcccgggaagagttcgacgccctgtatgagaaggtccgggcggag
ctgatcgacaccgtcttcacggtgaccgcaatcgtggagaaggtcctctcagcgacccgc
cggatccagaaacagctcaagggcaccacgtcgctggcgctgatttcagcgctgaacgat
gtccgcgcccagctggagcagctggtctatcccggctttgtggcccggaccggttatgcc
cagctctcccagctgccgcggtacctggcgggcattgagcggcgcctggaaaaactgccc
acgaacgtccagcgggattcgctgagcatggcagtggtgcaggggctcgaagatgattac
gacgacgccgtcgcggccctggtgcccgggcgcggcactcccccggcgctggcggaggtc
cgctggatgatcgaggaactgcggatttcgttctttgcccaggaactgggaacggcccgg
tccgtttcagagaaacggatccggaccgccctgaaccaggctttggctccggcctag
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