Antrostomus carolinensis (chuck-will's-widow): 104521532
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Entry
104521532 CDS
T08541
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
acar
Antrostomus carolinensis (chuck-will's-widow)
Pathway
acar03013
Nucleocytoplasmic transport
acar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104521532 (UPF1)
03015 mRNA surveillance pathway
104521532 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acar03019
]
104521532 (UPF1)
Enzymes [BR:
acar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104521532 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104521532 (UPF1)
Messenger RNA biogenesis [BR:
acar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104521532 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104521532 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104521532
NCBI-ProteinID:
XP_010161861
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MFKTELLFQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCG
IHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCG
CRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPS
EQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFG
PLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYK
GDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL
KTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL
SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK
SREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELL
MNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLG
PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA
ADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKP
DQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEH
QGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLR
ESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIG
MISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGI
PGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEF
KSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagactgagcttttatttcaggttaacggacctgatggcattctgcagaatgga
gctgtggatgacaacgtggctaaaaccagccagcttctggcagagttgaattttgaagaa
gatgaagaagacacctattacacaaaggatcttcctgtgcatgcttgcagttactgtggt
atccatgaccctgcttgtgtggtttactgtaacaccagcaaaaagtggttctgtaacggg
cgtggaaatacatctggcagccatattgttaatcatcttgtgagagcaaagtgcaaagag
gtgactctccataaagatggacctctaggagagactgtcttggaatgttacaactgtgga
tgtcgtaatgtgtttctccttggctttattccagctaaggcagactctgtggttgttttg
ctctgcaggcagccatgtgccagtcagagcagtttaaaggatattaattgggacagttca
cagtggcaacctcttatccaagatcgctgcttcctttcatggctggtgaagattccatct
gaacaggaacagttgagagcacgtcagattacagctcaacagattaacaaactggaagag
ctttggaaggaaaatccatctgcaacccttgaggacttagaaaagcctggtgttgatgaa
gaaccacagcatgtcctgctgagatatgaagatgcttatcaataccaaaatatatttggt
cctctagtcaagcttgaggcagactatgacaagaaactcaaggagtcccagacccaagat
aacatcacggtcagatgggacctgggcttgaacaagaaaagaattgcttatttcactttg
ccaaagactgattcagatatgcgtcttatgcaaggagatgagatctgcttgaggtataaa
ggagacctggcacctttatggaaaggaattggtcatgttatcaaagttcctgataattat
ggtgatgagatagccattgagctgaggagcagcgttggagcaccagtggaagttactcat
aacttccaagtggattttgtgtggaagtcaacttcatttgacagaatgcagagtgcttta
aaaaccttcgctgtagatgagacttcagtgtctgggtacatctatcacaaactcttaggt
catgaggtagaagatgtaattattaaatgccagttgccaaagcgctttacagcacaagga
cttcctgatctcaaccattctcaggtttatgctgtgaagactgtcctgcagcgtcctctg
agccttattcagggtcctcctggtactggaaaaacagtgacatcagccacaattgtctat
catctggccagacagggcaatgggcctgtgctagtctgtgctccgagtaatattgctgta
gatcagctgactgagaagatccatcaaactggactgaaagtggttcgtctgtgtgctaaa
agtcgtgaggccattgattctcctgtatccttcttggccctgcataaccagatcagaaac
atggatagcatgccagagcttcagaaactgcagcagcttaaagatgaaactggagaactc
tcatctgctgatgagaaacgttaccgcgcactgaagcgaactgcagagcgtgaattactc
atgaatgcagatgtcatctgttgcacgtgtgtgggagctggtgatccaagactggcaaag
atgcagttccgctccattctgattgatgaaagcacacaggctactgagccagagtgcatg
gtgccagttgtcctgggagcaaagcagcttattcttgtgggtgaccactgccagcttggt
cctgttgtgatgtgtaagaaagctgcaaaggctggactgtctcagtctctctttgagagg
ctggtggtgctggggattcggccgattcgcctgcaggtgcagtatcgcatgcaccctgcg
ctcagtgcttttccatccaacatcttctatgagggctcactccagaatggtgtcactgca
gcggaccgtgtgaaaaaaggttttgatttccagtggccacagccagataagccaatgttt
ttctatgttacacaaggacaggaggaaattgccagctcaggcacctcttatttgaacagg
acggaagctgccaatgtggagaagataactacaaagcttttgaaagctggtgccaaacca
gatcagattggcattattactccttatgaaggtcagcgatcctatctggtgcagtacatg
cagttcagtggttccttgcacacgaagctctaccaggaagtggaaattgcaagtgtggat
gccttccagggacgagagaaggacttcattatcctttcttgtgtgagggccaatgaacac
caaggaataggcttcctgaatgaccccaggcgtctcaatgtggctcttacaagagcaagg
tatggagtaattattgttgggaacccaaaagcactgtccaaacaaccactttggaatcat
ttgctgaattactacaaggagcagaaggttctggtggagggaccactgaataacctccgg
gaaagcctcatgcagttcagcaagccccggaaacttgtcaataccatcaacccaggtgcc
cgtttcatgactactgccatgtacgatgcgcgtgaggcgattattccagggtctgtctat
gaccggagcagtcaagggcgcccatccaacatgtacttccaaacccacgaccagattggg
atgatcagtgctggccccagccacgtcactgctatgaacattcccatccctttcaacctt
gtgatgccaccgatgccaccaccgggatactttggccaggctaacggaccagctgcagga
cgtggggcgccaaaaggaaagactggtcgtggtgggcgccagaaaaatcgttttgggatt
cctggaactagtcagtcaaaccttccaaatagtcaagcgagtcaagatgtggtgtcccag
cctttctcccagggtccactgactcaggggtatatctccatgagtcagccatcacagatg
agtcagcctgggctctcccaaccagaattatcacaggacagttaccttggtgatgagttt
aaatctcagattgacgtggcgctgtcacaggactctacttaccagggtgaacgtgcatat
caacatggcggagtgacgggactgtcacagtattag
DBGET
integrated database retrieval system
